H. Nijveen

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Aliases
H Nijveen, H. Nijveen, Harm Nijveen
Publication record
89 papers · 4,750 citations · H-index 25

PAPERS

Translational landscape during seed germination revealed by ribosome profiling
20260 citationsauthor #4
Transcriptome Profiling of Resistance Genes Analogs in Soybean’s Cross-Tolerance to Water Limitation and Rust Stress
20251 citationsauthor #7
The PEBP genes FLOWERING LOCUS T and TERMINAL FLOWER 1 modulate seed dormancy and size
20252 citationsauthor #6
Differential growth and flowering capacity of tulip bulbs and the potential involvement of PHOSPHATIDYLETHANOLAMINE-BINDING PROTEINS (PEBPs)
20253 citationsauthor #12
Creating a biomedical knowledge base by addressing GPT inaccurate responses and benchmarking context
20250 citationsauthor #15
Rational design of induced regeneration via somatic embryogenesis in the absence of exogenous phytohormones
20254 citationsauthor #14
Unravelling the dynamics of seed‐stored mRNAs during seed priming
20255 citationsauthor #4
Translational landscape during Seed Germination at Sub-Codon resolution
20251 citationsauthor #4
Ambient temperature dependent changes in DNA methylation in Arabidopsis thaliana Col-0 and the decrease in DNA methylation 1 mutant
20250 citationsauthor #2
Cross-species transcriptomics reveals differential regulation of essential photosynthesis genes in Hirschfeldia incana
20240 citationsauthor #7
SeedMatExplorer: The transcriptome atlas of Arabidopsis seed maturation
20242 citationsauthor #10
Creating a biomedical knowledge base by addressing GPT inaccurate responses and benchmarking context
20244 citationsauthor #15
The effect of developmental variation on expression QTLs in a multi parental C. elegans population
20230 citationsauthor #4
Comparative transcriptomics of Hirschfeldia incana and relatives highlights differences in photosynthetic pathways
20231 citationsauthor #7
Modulation of quantitative trait loci for Arabidopsis thaliana seed performance by the maternal and germination environment
20230 citationsauthor #3
The effect of developmental variation on expression QTLs in a multi parental Caenorhabditis elegans population
20232 citationsauthor #4
Making use of naturally occurring variation within the Arabidopsis thaliana
20230 citationsauthor #3
Genomic prediction in plants: opportunities for ensemble machine learning based approaches [version 1; peer review: awaiting peer review]
20220 citationsauthor #3
Genetic mechanisms underlying increased microalgal thermotolerance, maximal growth rate, and yield on light following adaptive laboratory evolution
202222 citationsauthor #9
Genomic prediction in plants: opportunities for ensemble machine learning based approaches
202211 citationsauthor #3
Short-term physiologic response of the green microalga Picochlorum sp. (BPE23) to supra-optimal temperature
202223 citationsauthor #4
Prioritizing candidate eQTL causal genes in Arabidopsis using RANDOM FORESTS
20224 citationsauthor #4
Prior Biological Knowledge Improves Genomic Prediction of Growth-Related Traits in Arabidopsis thaliana
202112 citationsauthor #3
Delayed Protein Changes During Seed Germination
20219 citationsauthor #5
Extracting the GEMs: Genotype, Environment, and Microbiome Interactions Shaping Host Phenotypes
202126 citationsauthor #5
The genetics of gene expression in a C. elegans multi parental recombinant inbred line population
20211 citationsauthor #3
Plasticity of maternal environment-dependent expression-QTLs of tomato seeds
20212 citationsauthor #2
The genetics of gene expression in a Caenorhabditis elegans multiparental recombinant inbred line population
20217 citationsauthor #3
Network Analysis Prioritizes DEWAX and ICE1 as the Candidate Genes for Major eQTL Hotspots in Seed Germination of Arabidopsis thaliana
20205 citationsauthor #9
WormQTL3.0: supporting more paradigms and analyses
20200 citationsauthor #3
Detection of QTLs for genotype × environment interactions in tomato seeds and seedlings
202015 citationsauthor #5
Network Analysis Prioritizes DEWAX and ICE1 as the Candidate Genes for Major eQTL Hotspots in Seed Germination
20205 citationsauthor #9
CyLineUp: A Cytoscape app for visualizing data in network small multiples [version 1; peer review: 2 approved]
20200 citationsauthor #7
Induction of desiccation tolerance in desiccation sensitive Citrus limon seeds
201917 citationsauthor #2
A blueprint of seed desiccation sensitivity in the genome of Castanospermum australe
20195 citationsauthor #8
Kammenga, J. and Nijveen, H. (2019) A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history
20190 citationsauthor #3
WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans
201922 citationsauthor #7
Dormancy cycling: translation‐related transcripts are the main difference between dormant and non‐dormant seeds in the field
201936 citationsauthor #3
A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits
201931 citationsauthor #3
A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters
201911 citationsauthor #7
Extracting the GEMs: Genotype, Environment and Microbiome interactions shaping host phenotypes
201919 citationsauthor #4
Peer Review #1 of "GEsture: an online hand-drawing tool for gene expression pattern search (v0.2)"
20180 citationsauthor #1
A multi-parent recombinant inbred line population of Caenorhabditis elegans enhances mapping resolution and identification of novel QTLs for complex life-history traits
20182 citationsauthor #3
Tulipa gesneriana and Lilium longiflorum PEBP Genes and Their Putative Roles in Flowering Time Control
201845 citationsauthor #8
Molecular Regulation of Temperature-Dependent Floral Induction in Tulipa gesneriana1
201735 citationsauthor #2
Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 × Shahdara RIL Population
201719 citationsauthor #3
AraQTL – workbench and archive for systems genetics in Arabidopsis thaliana
201722 citationsauthor #1
A footprint of desiccation tolerance in the genome of Xerophyta viscosa
2017120 citationsauthor #6
GeneNetwork: framework for web-based genetics
201637 citationsauthor #6
CyLineUp: A Cytoscape app for visualizing data in network small multiples
20163 citationsauthor #6
Fire Usage and Ancient Hominin Detoxification Genes: Protective Ancestral Variants Dominate While Additional Derived Risk Variants Appear in Modern Humans
201612 citationsauthor #6
Learning from Co-expression Networks: Possibilities and Challenges
2016261 citationsauthor #2
Propagation of errors in citation networks: a study involving the entire citation network of a widely cited paper published in, and later retracted from, the journal Nature
201654 citationsauthor #2
AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations
2016308 citationsauthor #5
Parental Effects on Seed Transcriptome-Metabolome
20160 citationsauthor #6
Effects of Parental Temperature and Nitrate on Seed Performance are Reflected by Partly Overlapping Genetic and Metabolic Pathways.
201642 citationsauthor #6
Elucidating and mining the Tulipa and Lilium transcriptomes
201618 citationsauthor #3
Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks
20151 citationsauthor #3
Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856
2015123 citationsauthor #3
Time-series analysis of the transcriptome of the re-establishment of desiccation tolerance by ABA in germinated Arabidopsis thaliana seeds
20156 citationsauthor #2
A gene co-expression network predicts functional genes controlling the re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds
201556 citationsauthor #3
A gene co-expression network predicts functional genes controlling the re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds
20150 citationsauthor #3
Birth, Death, and Diversification of Mobile Promoters in Prokaryotes
20148 citationsauthor #2
Next-gen genetical genomics; RNA-sequencing of a new multi-parent recombinant inbred line population of Caenorhabditis elegans
20140 citationsauthor #3
Beyond genomic variation - comparison and functional annotation of three Brassica rapa genomes: a turnip, a rapid cycling and a Chinese cabbage
2014103 citationsauthor #4
Understanding and identifying amino acid repeats
201470 citationsauthor #2
Beyond genomic variation - comparison and functional annotation of three Brassica rapagenomes: a turnip, a rapid cycling and a Chinese cabbage
20143 citationsauthor #4
Interaction between parental environment and genotype affects plant and seed performance in Arabidopsis
2014162 citationsauthor #5
Applications in computer-assisted biology
20130 citationsauthor #1
Obituary: In memory of Jack Leunissen
20130 citationsauthor #2
QualitySNPng: a user-friendly SNP detection and visualization tool
201335 citationsauthor #1
The Human Leukocyte Antigen–presented Ligandome of B Lymphocytes*
2013111 citationsauthor #6
The Human Leukocyte Antigen–presented Ligandome of B Lymphocytes*□S
20131 citationsauthor #6
Discovery of T Cell Epitopes Implementing HLA-Peptidomics into a Reverse Immunology Approach
201333 citationsauthor #6
Promoter reuse in prokaryotes
20127 citationsauthor #1
Promoter propagation in prokaryotes
201228 citationsauthor #2
ProRepeat: an integrated repository for studying amino acid tandem repeats in proteins
201118 citationsauthor #4
HSPVdb—the Human Short Peptide Variation Database for improved mass spectrometry-based detection of polymorphic HLA-ligands
201016 citationsauthor #2
HSPVdb—the Human Short Peptide Variation Database for improved mass spectrometry-based detection of polymorphic HLA-ligands
201016 citationsauthor #1
Constraint-based probabilistic learning of metabolic pathways from tomato volatiles
200919 citationsauthor #6
ProGMap: an integrated annotation resource for protein orthology
200920 citationsauthor #4
Benchmarking protein classification algorithms via supervised cross-validation.
200827 citationsauthor #6
TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure
200614 citationsauthor #3
Regulatory Elements in the Rat βB2-crystallin Promoter
200125 citationsauthor #2
Regulatory elements in the rat betaB2-crystallin promoter.
20015 citationsauthor #2
Turning CFCs into salt.
19962,375 citationsauthor #2
DNA polymorphisms and conditions for SSCP analysis of the 20 exons of the ret proto-oncogene.
199528 citationsauthor #8
Mutations in the RET proto-oncogene in sporadic medullary thyroid carcinomas
19949 citationsauthor #4
DNA polymorphisms and conditions for SSCP analysis of the 20 exons of the ret proto-oncogene.
1994150 citationsauthor #8

TIMELINE

1994 159 citations

1995 28 citations

1996 2,375 citations

2001 30 citations

2006 14 citations

2008 27 citations

2009 39 citations

2010 16 citations

2011 18 citations

2012 35 citations

2013 180 citations

2014 346 citations

2015 186 citations

2016 735 citations

2017 196 citations

2018 47 citations

2019 141 citations

2020 25 citations

2021 57 citations

2022 60 citations

2023 3 citations

2024 6 citations

2025 16 citations

2026 0 citations

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