K. Denby

PROFILE

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Aliases
Katie Jane Denby, K Denby, Katherine Denby, K. Denby, Katie J. Denby, Katherine J Denby, Katherine J. Denby
Publication record
89 papers · 5,761 citations · H-index 37

PAPERS

Identification of Lactuca sativa transcription factors impacting resistance to Botrytis cinerea through predictive network inference
20232 citationsauthor #13
The Regenerative Lens: A conceptual framework for regenerative social-ecological systems
202376 citationsauthor #7
Viewpoints Standards for plant synthetic biology: a common syntax for exchange of DNA parts
20230 citationsauthor #53
Impact on Arabidopsis growth and stress resistance of depleting the Maf1 repressor of RNA polymerase III.
20224 citationsauthor #10
Identification of genetic loci in lettuce mediating quantitative resistance to fungal pathogens
202211 citationsauthor #15
Plant responses and adaptations to a changing climate.
202214 citationsauthor #2
Exploiting breakdown in nonhost effector–target interactions to boost host disease resistance
202226 citationsauthor #22
Time series transcriptomics reveals a BBX32-directed control of acclimation to high light in mature Arabidopsis leaves.
202124 citationsauthor #16
A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis
202172 citationsauthor #17
A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop.
202141 citationsauthor #13
Transformations to regenerative food systems-An outline of the FixOurFood project.
202114 citationsauthor #3
Time series transcriptomics reveals a BBX32-directed control of dynamic acclimation to high light in mature Arabidopsis leaves
20203 citationsauthor #16
Downy Mildew effector HaRxL21 interacts with the transcriptional repressor TOPLESS to promote pathogen susceptibility
202038 citationsauthor #10
Novel markers for high-throughput protoplast-based analyses of phytohormone signaling
202013 citationsauthor #4
Insect egg-induced physiological changes and transcriptional reprogramming leading to gall formation.
202018 citationsauthor #2
A Molecular Signal Integration Network Underpinning Arabidopsis Seed Germination
202075 citationsauthor #6
Transcriptional Dynamics of the Salicylic Acid Response and its Interplay with the Jasmonic Acid Pathway
201932 citationsauthor #6
Global burden of crop loss
201918 citationsauthor #3
Genetic improvement of Amaranthus for enhanced nutrition and smallholder livelihoods
20190 citationsauthor #1
Addressing the threat of climate change to agriculture requires improving crop resilience to short-term abiotic stress
201823 citationsauthor #4
A Framework for Engineering Stress Resilient Plants Using Genetic Feedback Control and Regulatory Network Rewiring.
201814 citationsauthor #5
STFC Food Network
20170 citationsauthor #2
Harnessing diversity from ecosystems to crops to genes
201711 citationsauthor #5
A Systems Approach to Breeding Disease Resistance in Lettuce Against Necrotrophic Fungal Pathogens
20170 citationsauthor #1
Bringing numerous methods for expression and promoter analysis to a public cloud computing service
201759 citationsauthor #6
Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network[OPEN]
2017179 citationsauthor #15
Spotlight: STFC food network+
20170 citationsauthor #2
Control Strategies for Mitigating the Effect of External Perturbations on Gene Regulatory Networks
20172 citationsauthor #3
Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis[CC-BY]
2016107 citationsauthor #26
Re-Designing Regulatory Networks Underlying Plant Stress Responses
20161 citationsauthor #1
Studying the adaptation of Escherichia coli K-12 in response to trimethylamine-N-oxide
20160 citationsauthor #1
Insect Gallers and Their Plant Hosts: From Omics Data to Systems Biology
201636 citationsauthor #2
Architecture and dynamics of the jasmonic acid gene regulatory network
201671 citationsauthor #15
The mechanism of a formaldehyde-sensing transcriptional regulator
201657 citationsauthor #1
Time-series transcriptomics reveals that AGAMOUS-LIKE 22 affects 3 primary metabolism and developmental processes in drought-stressed 4 Arabidopsis 5 6 Running title : Temporal drought dynamics in Arabidopsis 7 8
20160 citationsauthor #30
Overview of Plant Defence Systems: Lessons from Arabidopsis-Botrytis cinerea Systems Biology
20168 citationsauthor #3
Reassess the t Test: Interact with All Your Data via ANOVA
201560 citationsauthor #5
Standards for plant synthetic biology: a common syntax for exchange of DNA parts.
2015254 citationsauthor #55
Bananageddon: Millions face hunger as deadly fungus Panama disease decimates global banana crop
20150 citationsauthor #8
Jasmonate signalling drives time‐of‐day differences in susceptibility of Arabidopsis to the fungal pathogen Botrytis cinerea
201597 citationsauthor #9
Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity
201549 citationsauthor #5
Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000[OPEN]
2015133 citationsauthor #24
Adaptation of anaerobic cultures of E scherichia coli K‐12 in response to environmental trimethylamine‐N‐oxide
201515 citationsauthor #1
Modelling signaling networks underlying plant defence.
201531 citationsauthor #2
Network modeling to understand plant immunity.
201439 citationsauthor #3
Carbon Monoxide-releasing Molecule-3 (CORM-3; Ru(CO)3Cl(Glycinate)) as a Tool to Study the Concerted Effects of Carbon Monoxide and Nitric Oxide on Bacterial Flavohemoglobin Hmp
201418 citationsauthor #2
Increased Resistance to Biotrophic Pathogens in the Arabidopsis Constitutive Induced Resistance 1 Mutant Is EDS1 and PAD4-Dependent and Modulated by Environmental Temperature
201414 citationsauthor #8
Wigwams: identifying gene modules co-regulated across multiple biological conditions
201329 citationsauthor #11
Gene-for-gene tolerance to bacterial wilt in Arabidopsis.
201327 citationsauthor #5
A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves
2013199 citationsauthor #14
MEDIATOR25 Acts as an Integrative Hub for the Regulation of Jasmonate-Responsive Gene Expression in Arabidopsis1[C][W]
2012222 citationsauthor #6
Bacterial haemoglobins and nitric oxide: Diversity and redundancy?
20120 citationsauthor #6
Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis[C][W][OA]
2012343 citationsauthor #29
Title : Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks
20120 citationsauthor #3
Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks
201258 citationsauthor #3
Conserved Noncoding Sequences Highlight Shared Components of Regulatory Networks in Dicotyledonous Plants[W][OA]
201245 citationsauthor #11
MEDIATOR 25 Acts as an Integrative Hub for the Regulation of Jasmonate-Responsive Gene Expression in Arabidopsis 1 [ C ] [ W ]
201227 citationsauthor #6
A Eucalyptus bacterial wilt isolate from South Africa is pathogenic on Arabidopsis and manipulates host defences
20116 citationsauthor #4
Proteomic analysis of the Arabidopsis thaliana-Botrytis cinerea interaction using two-dimensional liquid chromatography
201114 citationsauthor #3
Spatial and temporal transcriptomic analysis of the Arabidopsis thaliana–Botrytis cinerea interaction
201144 citationsauthor #2
Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco
201134 citationsauthor #6
High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation[C][W][OA]
2011811 citationsauthor #23
Inferring the time-invariant topology of a nonlinear sparse gene regulatory network using fully Bayesian spline autoregression.
201137 citationsauthor #3
Metabolomic approaches reveal that cell wall modifications play a major role in ethylene-mediated resistance against Botrytis cinerea.
201190 citationsauthor #10
Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana
201055 citationsauthor #7
Inferring the topology of a non-linear sparse gene regulatory network using fully Bayesian spline regression
20100 citationsauthor #4
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series
2009107 citationsauthor #2
Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series
20096 citationsauthor #2
R/BHC: fast Bayesian hierarchical clustering for microarray data
200959 citationsauthor #7
Basal resistance against Pseudomonas syringae in Arabidopsis involves WRKY53 and a protein with homology to a nematode resistance protein.
2007167 citationsauthor #4
Comparison of desiccation-induced gene expression in vegetative tissue and seed of the resurrection plant, Xerophyta humilis
20072 citationsauthor #2
Identification of different temporal classes of gene expression during a cycle of desiccation in the resurrection plant, Xerophyta humilis
20071 citationsauthor #2
Microarray analysis of the Arabidopsis thaliana cir1 (constitutively induced resistance 1) mutant reveals candidate defence response genes against Pseudomonas syringae pv tomato DC3000
20076 citationsauthor #3
Basal Resistance Against in Involves WRKY53 and a Protein with Homology to a Nematode Resistance Protein
20073 citationsauthor #4
Molecular tools to study desiccation tolerance in the resurrection plant Xerophyta humilis
20070 citationsauthor #7
PAMP recognition and the plant–pathogen arms race
2006144 citationsauthor #3
Plant guanyl cyclases - an increasingly complex and growing family
20060 citationsauthor #5
Engineering drought and salinity tolerance in plants: lessons from genome-wide expression profiling in Arabidopsis.
2005165 citationsauthor #1
The Signature of Seeds in Resurrection Plants: A Molecular and Physiological Comparison of Desiccation Tolerance in Seeds and Vegetative Tissues1
2005176 citationsauthor #2
Secondary metabolites influence Arabidopsis/Botrytis interactions: variation in host production and pathogen sensitivity.
2005284 citationsauthor #3
ups1, an Arabidopsis thaliana camalexin accumulation mutant defective in multiple defence signalling pathways.
200534 citationsauthor #1
Microarray experiments : considerations for experimental design : review article
200511 citationsauthor #2
A constitutive PR-1::luciferase expression screen identifies Arabidopsis mutants with differential disease resistance to both biotrophic and necrotrophic pathogens.
200511 citationsauthor #5
Salt and osmotic stress cause rapid increases in Arabidopsis thaliana cGMP levels
2004190 citationsauthor #5
Towards transcript profiling of desiccation tolerance in Xerophyta humilis: Construction of a normalized 11 k X. humilis cDNA set and microarray expression analysis of 424 cDNAs in response to dehydration
200492 citationsauthor #5
Identification of Botrytis cinerea susceptibility loci in Arabidopsis thaliana.
2004187 citationsauthor #1
Disease resistance signalling in Arabidopsis : applications in the study of plant pathology in South Africa : review article
20025 citationsauthor #2
Genetic Approaches to Understanding the Regulation of Tryptophan Biosynthesis
19980 citationsauthor #1
Carbon Catabolite Repression Regulates Glyoxylate Cycle Gene Expression in Cucumber.
1994319 citationsauthor #2

TIMELINE

1994 319 citations

1998 0 citations

2002 5 citations

2004 469 citations

2005 681 citations

2006 144 citations

2007 179 citations

2009 172 citations

2010 55 citations

2011 1,036 citations

2012 695 citations

2013 255 citations

2014 71 citations

2015 639 citations

2016 280 citations

2017 251 citations

2018 37 citations

2019 50 citations

2020 147 citations

2021 151 citations

2022 55 citations

2023 78 citations

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