B. Ibrahim

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Aliases
B. Ibrahim, Bashar Rer. Nat. Ibrahim, Bashar Ibrahim
Publication record
60 papers · 1,071 citations · H-index 20

PAPERS

A formal approach to the hierarchical structures of microbial communities with negative interactions
20250 citationsauthor #2
Revealing the hierarchical structure of microbial communities
20243 citationsauthor #3
Computing all persistent subspaces of a reaction-diffusion system
20236 citationsauthor #4
Persistent Subspaces of Reaction-Based Dynamical Systems
20236 citationsauthor #1
Bioinformatics Analysis of the Periodicity in Proteins with Coiled-Coil Structure—Enumerating All Decompositions of Sequence Periods
20222 citationsauthor #3
A novel method for achieving an optimal classification of the proteinogenic amino acids
20208 citationsauthor #3
Extending the minimal model of metabolic oscillations in Bacillus subtilis biofilms
20206 citationsauthor #2
Organizations in reaction-diffusion systems: Effects of diffusion and boundary conditions
202011 citationsauthor #4
The International Virus Bioinformatics Meeting 2020
20203 citationsauthor #14
Structure and Hierarchy of SARS-CoV-2 Infection Dynamics Models Revealed by Reaction Network Analysis
202019 citationsauthor #3
Supplementary material from "Differential equation-based minimal model describing metabolic oscillations in Bacillus subtilis biofilms"
20200 citationsauthor #2
Chemical Organization Theory of Reaction-diffusion systems
20190 citationsauthor #3
Spatial Rule-Based Simulations: The SRSim Software.
20192 citationsauthor #3
The Third Annual Meeting of the European Virus Bioinformatics Center
20195 citationsauthor #2
Differential equation-based minimal model describing metabolic oscillations in Bacillus subtilis biofilms
201912 citationsauthor #2
Multi-scale stochastic organization-oriented coarse-graining exemplified on the human mitotic checkpoint
201911 citationsauthor #11
Combining evolution and self-organization to find natural Boolean representations in unconventional computational media
20193 citationsauthor #3
Structure and Hierarchy of Influenza Virus Models Revealed by Reaction Network Analysis
201913 citationsauthor #9
Trends in mathematical modeling of host–pathogen interactions
201942 citationsauthor #6
Identification of potential microRNAs associated with Herpesvirus family based on bioinformatic analysis
20181 citationsauthor #4
A new era of virus bioinformatics.
201862 citationsauthor #1
SilentMutations (SIM): A tool for analyzing long-range RNA–RNA interactions in viral genomes and structured RNAs
20186 citationsauthor #3
Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting
20188 citationsauthor #1
Semiotic Structures and Meaningful Information in Biological Systems
20180 citationsauthor #3
Mathematical modeling and numerical simulation of the mitotic spindle orientation system.
20184 citationsauthor #1
Virologists—Heroes need weapons
201812 citationsauthor #2
Global importance of RNA secondary structures in protein-coding sequences
201819 citationsauthor #3
A Dynamical Model for Activating and Silencing the Mitotic Checkpoint
201720 citationsauthor #3
A Dynamical Model for Activating and Silencing the Mitotic Checkpoint
20170 citationsauthor #3
A Mathematical Framework for Kinetochore-Driven Activation Feedback in the Mitotic Checkpoint
20175 citationsauthor #1
Mathematical analysis and modeling of DNA segregation mechanisms.
20176 citationsauthor #1
Systems Biology Modeling of Five Pathways for Regulation and Potent Inhibition of the Anaphase-Promoting Complex (APC/C): Pivotal Roles for MCC and BubR1
20158 citationsauthor #1
Structural analysis of in silico mutant experiments of human inner-kinetochore structure
20158 citationsauthor #5
Spindle assembly checkpoint is sufficient for complete Cdc20 sequestering in mitotic control
201516 citationsauthor #1
Understanding Networks of Computing Chemical Droplet Neurons Based on Information Flow
201528 citationsauthor #4
Toward a systems-level view of mitotic checkpoints.
201529 citationsauthor #1
In silico spatial simulations reveal that MCC formation and excess BubR1 are required for tight inhibition of the anaphase-promoting complex.
20158 citationsauthor #1
Molecular Codes Through Complex Formation in a Model of the Human Inner Kinetochore
201411 citationsauthor #5
Active Transport Can Greatly Enhance Cdc20:Mad2 Formation
201414 citationsauthor #1
Effects of small particle numbers on long-term behaviour in discrete biochemical systems
201435 citationsauthor #5
Rule-based modeling and simulations of the inner kinetochore structure.
201330 citationsauthor #10
Molecular Codes Through Complex Formation in a Model of the Human Inner Kinetochore
20130 citationsauthor #5
Multi-scale Modelling of Computers Made from Excitable Chemical Droplets
201323 citationsauthor #6
Spatial Rule-Based Modeling: A Method and Its Application to the Human Mitotic Kinetochore
201334 citationsauthor #1
Cycles and the Qualitative Evolution of Chemical Systems
201240 citationsauthor #5
Elm 1 kinase activates the spindle position checkpoint kinase Kin 4
20106 citationsauthor #5
Elm1 kinase activates the spindle position checkpoint kinase Kin4
201067 citationsauthor #5
Monitoring spindle orientation: Spindle position checkpoint in charge
201065 citationsauthor #2
Rule-based spatial modeling with diffusing, geometrically constrained molecules
2010109 citationsauthor #2
The role of localization in the operation of the mitotic spindle assembly checkpoint
200925 citationsauthor #2
In silico study of kinetochore control, amplification, and inhibition effects in MCC assembly
200928 citationsauthor #1
Systems Biology of Mitosis
20081 citationsauthor #1
Enhancing Parameter Estimation of Biochemical Networks by Exponentially Scaled Search Steps
20086 citationsauthor #2
In-Silico Modeling of the Mitotic Spindle Assembly Checkpoint
200847 citationsauthor #1
Mad2 binding is not sufficient for complete Cdc20 sequestering in mitotic transition control (an in silico study).
200833 citationsauthor #1
Hierarchically Evolvable Components for Complex Systems : Biologically Inspired Algorithmic Design
20072 citationsauthor #3
Stochastic effects in a compartmental model for mitotic checkpoint regulation
200727 citationsauthor #1
Towards Evolutionary Network Reconstruction Tools for Systems Biology
200735 citationsauthor #3
Molecular Codes in Large Metabolic Networks
year unknown0 citationsauthor #2
Molecular Systems Biology Peer Review Process File a Dynamical Model of the Spindle Position Checkpoint Transaction Report
year unknown41 citationsauthor #6

TIMELINE

2007 64 citations

2008 87 citations

2009 53 citations

2010 247 citations

2012 40 citations

2013 87 citations

2014 60 citations

2015 97 citations

2017 31 citations

2018 112 citations

2019 88 citations

2020 47 citations

2022 2 citations

2023 12 citations

2024 3 citations

2025 0 citations

Unknown 41 citations

B. Ibrahim

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