Heather K. Allen

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Aliases
Heather Allen, Heather K Allen
Publication record
76 papers · 6,846 citations · H-index 29

PAPERS

Route of oxytetracycline administration differentially impacts the growth and gut microbiome of pigs co-infected with Bordetella bronchiseptica and Pasteurella multocida
20220 citationsauthor #6
Genomic Changes within a Subset of IncI2 Plasmids Associated with Dissemination of mcr-1 Genes and Other Important Antimicrobial Resistance Determinants
20224 citationsauthor #4
Weaning Age and Its Effect on the Development of the Swine Gut Microbiome and Resistome
202152 citationsauthor #4
Diversity of Antibiotic Resistance genes and Transfer Elements-Quantitative Monitoring (DARTE-QM): a method for detection of antimicrobial resistance in environmental samples
202113 citationsauthor #7
Antimicrobial resistance in commensal Escherichia coli and Enterococcus spp. isolated from pigs subjected to different antimicrobial administration protocols.
202114 citationsauthor #3
Weaning Age and Its Effect on the Development of the Swine Gut Microbiome and Resistome.
20211 citationsauthor #4
Recto-Anal Junction (RAJ) and Fecal Microbiomes of Cattle Experimentally Challenged With Escherichia coli O157:H7
202011 citationsauthor #4
Toward Antibiotic Stewardship: Route of Antibiotic Administration Impacts the Microbiota and Resistance Gene Diversity in Swine Feces
202030 citationsauthor #11
Outer membrane protein A (OmpA) of extraintestinal pathogenic Escherichia coli
202028 citationsauthor #4
Shifts in the nasal microbiota of swine in response to different dosing regimens of oxytetracycline administration.
201918 citationsauthor #2
Characterization of a multidrug-resistant (MDR) Salmonella enterica serovar I 4,[5],12:i:- isolate associated with a 2015 foodborne outbreak from pork
20190 citationsauthor #8
Associative effects of wet-distiller's grains plus solubles and tannin-rich peanut skin supplementation on in vitro rumen fermentation, greenhouse gas emissions, and microbial changes.
201932 citationsauthor #3
Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems
201924 citationsauthor #7
PSIX-1 Associative effect of wet-distillers’ grains plus solubles and tannin-rich peanut skin supplementation on in vitro rumen fermentation, greenhouse gas emissions, and microbiome changes
20195 citationsauthor #6
Dietary Resistant Potato Starch Alters Intestinal Microbial Communities and Their Metabolites, and Markers of Immune Regulation and Barrier Function in Swine
201949 citationsauthor #4
Fecal microbiota changes associated with dehorning and castration stress primarily affects light-weight dairy calves
201920 citationsauthor #4
Paenibacillus 79R4, a potential rumen probiotic to enhance nitrite detoxification and methane mitigation in nitrate-treated ruminants.
201921 citationsauthor #4
Cattle intestinal microbiota shifts following Escherichia coli O157:H7 vaccination and colonization
201921 citationsauthor #3
Porcine Response to a Multidrug-Resistant Salmonella enterica serovar I 4,[5],12:i:- Outbreak Isolate
201818 citationsauthor #5
Practical implications of erythromycin resistance gene diversity on surveillance and monitoring of resistance
201823 citationsauthor #5
Complete Genome Sequence of the Multidrug-Resistant Neonatal Meningitis Escherichia coli Serotype O75:H5:K1 Strain mcjchv-1 (NMEC-O75)
201812 citationsauthor #8
Isolation, characterization and strain selection of a Paenibacillus species for use as a probiotic to aid in ruminal methane mitigation, nitrate/nitrite detoxification and food safety.
201814 citationsauthor #4
PSII-16 Evidence for stratification of rumen wall microbial communities revealed by 16S rRNA based amplicon sequencing
20181 citationsauthor #2
Chlortetracycline Enhances Tonsil Colonization and Fecal Shedding of Multidrug-Resistant Salmonella enterica Serovar Typhimurium DT104 without Major Alterations to the Porcine Tonsillar and Intestinal Microbiota
201813 citationsauthor #3
Complete Genome Sequence of Avian Pathogenic Escherichia coli Strain APEC O2-211
20187 citationsauthor #5
Resistant potato starch fuels beneficial host-microbe interactions in the gut
201811 citationsauthor #4
Butyricicoccus porcorum sp. nov., a butyrate-producing bacterium from swine intestinal tract.
201837 citationsauthor #3
Alternatives to Antibiotics: Why and How
201730 citationsauthor #1
Meta-analysis To Define a Core Microbiota in the Swine Gut
2017268 citationsauthor #4
Prevalence, Evolution, and Dissemination of Antibiotic Resistance inSalmonella
20175 citationsauthor #3
305 A review and evaluation of antibiotic alternatives in the literature
20176 citationsauthor #6
Fermentation products as feed additives mitigate some ill-effects of heat stress in pigs.
201716 citationsauthor #13
Effect of sole or combined administration of nitrate and 3-nitro-1-propionic acid on fermentation and Salmonella survivability in alfalfa-fed rumen cultures in vitro.
20178 citationsauthor #3
Escherichia coli resistance and gut microbiota profile in pigs raised with different antimicrobial administration in feed
20170 citationsauthor #3
The In-Feed Antibiotic Carbadox Induces Phage Gene Transcription in the Swine Gut Microbiome
201741 citationsauthor #8
Faculty Opinions recommendation of Lytic to temperate switching of viral communities.
20160 citationsauthor #1
Pipeline for amplifying and analyzing amplicons of the V1–V3 region of the 16S rRNA gene
201667 citationsauthor #1
MOESM1 of Pipeline for amplifying and analyzing amplicons of the V1â V3 region of the 16S rRNA gene
20160 citationsauthor #1
Function and Phylogeny of Bacterial Butyryl Coenzyme A:Acetate Transferases and Their Diversity in the Proximal Colon of Swine
201631 citationsauthor #5
Prophylactic Administration of Vector-Encoded Porcine Granulocyte-Colony Stimulating Factor Reduces Salmonella Shedding, Tonsil Colonization, and Microbiota Alterations of the Gastrointestinal Tract in Salmonella-Challenged Swine
201619 citationsauthor #4
MOESM2 of Pipeline for amplifying and analyzing amplicons of the V1â V3 region of the 16S rRNA gene
20160 citationsauthor #1
A Response Regulator from a Soil Metagenome Enhances Resistance to the β-Lactam Antibiotic Carbenicillin in Escherichia coli
201523 citationsauthor #1
TractDegraders, from the Swine Intestinal Butyrate-Producing Bacteria, Including
20140 citationsauthor #3
Carbadox has both temporary and lasting effects on the swine gut microbiota
201471 citationsauthor #2
Altered egos: antibiotic effects on food animal microbiomes.
201482 citationsauthor #1
Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations
2014349 citationsauthor #2
Antibiotic resistance gene discovery in food-producing animals.
201494 citationsauthor #1
Finding alternatives to antibiotics
2014232 citationsauthor #1
Virus ecology and disturbances: impact of environmental disruption on the viruses of microorganisms
20145 citationsauthor #1
That's disturbing! An exploration of the bacteriophage biology of change
20137 citationsauthor #1
Running Title: Swine intestinal butyrate-producing bacteria 3
20130 citationsauthor #3
Faculty Opinions recommendation of Functional metagenomics reveals novel pathways of prebiotic breakdown by human gut bacteria.
20131 citationsauthor #2
Butyrate-Producing Bacteria, Including Mucin Degraders, from the Swine Intestinal Tract
201375 citationsauthor #3
Treatment, promotion, commotion: antibiotic alternatives in food-producing animals.
2013299 citationsauthor #1
Profiling the gastrointestinal microbiota in response to Salmonella: low versus high Salmonella shedding in the natural porcine host.
201390 citationsauthor #2
Estimation of viral richness from shotgun metagenomes using a frequency count approach
201330 citationsauthor #1
Faculty Opinions recommendation of Phage-mediated acquisition of a type III secreted effector protein boosts growth of salmonella by nitrate respiration.
20130 citationsauthor #2
The agricultural antibiotic carbadox induces phage-mediated gene transfer in Salmonella
201361 citationsauthor #2
Collateral effects of antibiotics on mammalian gut microbiomes
2012176 citationsauthor #2
Estimating Population Diversity with Unreliable Low Frequency Counts
20129 citationsauthor #3
In-feed antibiotic effects on the swine intestinal microbiome
2012927 citationsauthor #3
Faculty Opinions recommendation of Pseudomonas aeruginosa evasion of phagocytosis is mediated by loss of swimming motility and is independent of flagellum expression.
20120 citationsauthor #2
Antimicrobial Resistance in the Environment. Edited by Patricia L. Keen and Mark H. M. M. Montforts. Hoboken (New Jersey): Wiley. $129.95. xviii + 602 p. + 8 pl.; ill.; index. ISBN: 978-0-470-90542-5. 2012.
20120 citationsauthor #1
Estimating population diversity with CatchAll
201284 citationsauthor #6
Antibiotics in Feed Induce Prophages in Swine Fecal Microbiomes
2011212 citationsauthor #1
Estimating population diversity with unreliable low frequency counts.
20115 citationsauthor #3
Summer Workshop in Metagenomics: One Week Plus Eight Students Equals Gigabases of Cloned DNA
20117 citationsauthor #4
Construction and validation of two metagenomic DNA libraries from Cerrado soil with high clay content
201122 citationsauthor #3
Faculty Opinions recommendation of Moonlighting bacteriophage proteins derepress staphylococcal pathogenicity islands.
20100 citationsauthor #2
Call of the wild: antibiotic resistance genes in natural environments
20102,089 citationsauthor #1
Faculty Opinions recommendation of Manipulation of the microbiota of mass-reared Mediterranean fruit flies Ceratitis capitata (Diptera: Tephritidae) improves sterile male sexual performance.
20101 citationsauthor #2
Psychrotrophic Strain of Janthinobacterium lividum from a Cold Alaskan Soil Produces Prodigiosin
201092 citationsauthor #2
Resident Microbiota of the Gypsy Moth Midgut Harbors Antibiotic Resistance Determinants
200992 citationsauthor #1
Functional metagenomics reveals diverse β-lactamases in a remote Alaskan soil
2009529 citationsauthor #1
Intracellular Screen To Identify Metagenomic Clones That Induce or Inhibit a Quorum-Sensing Biosensor
2005217 citationsauthor #5
Clones That Induce or Inhibit a Quorum-Sensing 2005 . Intracellular Screen To Identify Metagenomic
20050 citationsauthor #5

TIMELINE

2005 217 citations

2009 621 citations

2010 2,182 citations

2011 246 citations

2012 1,196 citations

2013 563 citations

2014 833 citations

2015 23 citations

2016 117 citations

2017 374 citations

2018 136 citations

2019 190 citations

2020 69 citations

2021 80 citations

2022 4 citations

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