A. Bonin

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Aliases
A. Bonin, Aurelie Bonin, Aurélie Bonin
Publication record
97 papers · 10,537 citations · H-index 38

PAPERS

Gut content metabarcoding of six crustaceans provides detailed diet description and insights into their roles as predators and scavengers
20240 citationsauthor #5
In silico assessment of 18S rDNA metabarcoding markers for the characterization of nematode communities
202313 citationsauthor #4
Metabarcoding data reveal vertical multitaxa variation in topsoil communities during the colonization of deglaciated forelands
202216 citationsauthor #3
Environmental DNA of insects and springtails from caves reveals complex processes of eDNA transfer in soils.
202219 citationsauthor #4
The generality of cryptic dietary niche differences in diverse large-herbivore assemblages
202267 citationsauthor #7
Environmental DNA for biomonitoring
2021104 citationsauthor #2
Optimal sequence similarity thresholds for clustering of molecular operational taxonomic units in DNA metabarcoding studies
202134 citationsauthor #1
Environmental DNA of Insects and Springtails from Caves Reveals Complex Processes of Edna Transfer in Soils
20213 citationsauthor #4
The Retreat of Mountain Glaciers since the Little Ice Age: A Spatially Explicit Database
202131 citationsauthor #12
Double-digest RAD-sequencing: do pre- and post-sequencing protocol parameters impact biological results?
202117 citationsauthor #6
Assessing changes in stream macroinvertebrate communities across ecological gradients using morphological versus DNA metabarcoding approaches.
20215 citationsauthor #5
Biodiversity monitoring using environmental DNA
202136 citationsauthor #5
Variability of the Atmospheric PM10 Microbiome in Three Climatic Regions of France
20219 citationsauthor #3
Comparison of markers for the monitoring of freshwater benthic biodiversity through DNA metabarcoding
202052 citationsauthor #4
Modelling technical and biological biases in macroinvertebrate community assessment from bulk preservative using multiple metabarcoding markers
202043 citationsauthor #5
Metabarcodes for the monitoring of freshwater benthic biodiversity through environmental DNA
20200 citationsauthor #2
High levels of primary biogenic organic aerosols in the atmosphere in summer are driven by only a few microbial taxa from the leaves of surrounding plants
202048 citationsauthor #2
Effects of soil preservation for biodiversity monitoring using environmental DNA
202036 citationsauthor #2
Life history stage-specific diet shifts by dung beetles revealed using DNA metabarcoding
20200 citationsauthor #5
Morphological vs. DNA metabarcoding approaches for the evaluation of stream ecological status with benthic invertebrates: Testing different combinations of markers and strategies of data filtering
202043 citationsauthor #4
Supplementary material to "High levels of primary biogenic organic aerosols in the atmosphere in summer are driven by only a few microbial taxa from the leaves of surrounding plants"
20200 citationsauthor #2
High levels of primary biogenic organic aerosols are driven by only a few plant-associated microbial taxa
202029 citationsauthor #2
Sharing and reporting benefits from biodiversity research
202027 citationsauthor #7
DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions
2019340 citationsauthor #2
A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions
2019323 citationsauthor #26
DNA metabarcode choice and design
20184 citationsauthor #2
Host-associated microbiota
20180 citationsauthor #2
Single-species detection
20181 citationsauthor #2
DNA metabarcoding data analysis
20185 citationsauthor #2
Environmental DNA: For Biodiversity Research and Monitoring
2018625 citationsauthor #1
DNA amplification and multiplexing
20187 citationsauthor #2
Some early landmark studies
20180 citationsauthor #2
Diet shifts by adult flightless dung beetles Circellium bacchus, revealed using DNA metabarcoding, reflect complex life histories
201828 citationsauthor #5
Double-digest RAD-sequencing: do wet and dry protocol parameters impact biological results?
20184 citationsauthor #6
The future of eDNA metabarcoding
20180 citationsauthor #2
Analysis of bulk samples
20181 citationsauthor #2
Body size determines soil community assembly in a tropical forest.
2018157 citationsauthor #4
Introduction to environmental DNA (eDNA)
20184 citationsauthor #2
Environmental DNA for functional diversity
20186 citationsauthor #2
New Sedimentological Data within the Minagish Formation: Insights from Undeveloped Area, Onshore Kuwait
20170 citationsauthor #4
Soil community assembly varies across body sizes in a tropical forest
201711 citationsauthor #4
Controls on Reservoir Quality and Reservoir Architecture of Early Cretaceous carbonates in an Abu Dhabi Onshore Field Lekhwair, Kharaib and Lower Shuaiba Formations
201710 citationsauthor #8
Predictability of the Sedimentological Make-Up and Reservoir Quality in the Mauddud Formation Using FMI Logs - A Case Study from a North Kuwait Field
20173 citationsauthor #4
Cool episode and platform demise in the Early Aptian: New insights on the links between climate and carbonate production
201616 citationsauthor #1
Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community
2016108 citationsauthor #4
Sedimentological Characterisation and Sequence Stratigraphy of the Lowermost Lekhwair Deposits of the Southern Tethys Early Cretaceous, Onshore Abu Dhabi
20161 citationsauthor #3
Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System
2016194 citationsauthor #6
obitools: a unix‐inspired software package for DNA metabarcoding
2016962 citationsauthor #3
Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data
2015618 citationsauthor #3
The genetic architecture of a complex trait: Resistance to multiple toxins produced by Bacillus thuringiensis israelensis in the dengue and yellow fever vector, the mosquito Aedes aegypti.
201522 citationsauthor #1
Host genetic effects on the rumen microbiome as revealed by rumen content exchange in lactating cows
20150 citationsauthor #2
Comparative analysis of response to selection with three insecticides in the dengue mosquito Aedes aegypti using mRNA sequencing
201495 citationsauthor #6
Comparative analysis of response to selection with three insecticides in the dengue mosquito Aedes aegyptiusing mRNA sequencing
20142 citationsauthor #6
Impaired liver function in Xenopus tropicalis exposed to benzo[a]pyrene: transcriptomic and metabolic evidence
201451 citationsauthor #8
Gene expression patterns and sequence polymorphisms associated with mosquito resistance to Bacillus thuringiensis israelensis toxins
201434 citationsauthor #5
Impaired liver function in Xenopus tropicalis exposed to benzo[a]pyrene: transcriptomic and metabolic evidence
20140 citationsauthor #8
Chemical and biological insecticides select distinct gene expression patterns in Aedes aegypti mosquito
201428 citationsauthor #10
Effect of DNA extraction and sample preservation method on rumen bacterial population.
201485 citationsauthor #3
Gene expression patterns and sequence polymorphisms associated with mosquito resistance to Bacillus thuringiensis israelensis toxins
20141 citationsauthor #5
Reply on Comment by Longinelli (2013) on a revised phosphate–water fractionation equation
20136 citationsauthor #5
Allele Identification for Transcriptome-Based Population Genomics in the Invasive Plant Centaurea solstitialis
201348 citationsauthor #3
A road map for molecular ecology
2013117 citationsauthor #3
Spatial modelling of plant diversity from high-throughput environmental dna sequence data
20130 citationsauthor #7
Evidence for a complex Valanginian nannoconid decline in the Vocontian basin (South East France)
201256 citationsauthor #2
Community replacement of neritic carbonate organisms during the late Valanginian platform demise: A new record from the Provence Platform
201220 citationsauthor #1
Data Production and Analysis in Population Genomics
201262 citationsauthor #2
Virulence : damage to a host arising from extraction of resources by a pathogenic infection or collateral damage produced by the host ’ s immune response INTRODUCTION Inflammation
20120 citationsauthor #2
Adaptive Genetic Variation on the Landscape: Methods and Cases
2012289 citationsauthor #2
Allele identification in assembled genomic sequence datasets.
20122 citationsauthor #2
Conserving adaptive genetic diversity in dynamic landscapes
20118 citationsauthor #2
Effective population size is positively correlated with levels of adaptive divergence among annual sunflowers.
201192 citationsauthor #4
Promoting collaboration between livestock and wildlife conservation genetics communities
201113 citationsauthor #3
Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field
2010279 citationsauthor #8
Genome scan in the mosquito Aedes rusticus: population structure and detection of positive selection after insecticide treatment
201063 citationsauthor #3
Revised phosphate–water fractionation equation reassessing paleotemperatures derived from biogenic apatite
2010214 citationsauthor #5
Revised phosphate/water fractionation equation - implications for existing paleotemperature reconstructions using fish tooth apatite
20100 citationsauthor #5
BAMLINK - A CROSS DISCIPLINARY PROGRAMME TO ENHANCE THE ROLE OF BAMBARA GROUNDNUT (VIGNA SUBTERRANEA L. VERDC.) FOR FOOD SECURITY IN AFRICA AND INDIA
200917 citationsauthor #11
Initial results from applying Diversity Arrays Technology (DArT) and Massively Parallel Signature Sequencing (MPSS) to bambara groundnut.
20093 citationsauthor #4
Candidate genes revealed by a genome scan for mosquito resistance to a bacterial insecticide: sequence and gene expression variations
200935 citationsauthor #1
Revised delta18 O phosphate-water fractionation equation from fish raised in controlled environment
20091 citationsauthor #3
A MITE-based genotyping method to reveal hundreds of DNA polymorphisms in an animal genome after a few generations of artificial selection
200869 citationsauthor #1
Population genomics: a new generation of genome scans to bridge the gap with functional genomics
200862 citationsauthor #1
Population genetics reveals origin and number of founders in a biological invasion
2008186 citationsauthor #2
Spatial analysis method (sam): a software tool combining molecular and environmental data to identify candidate loci for selection
2008132 citationsauthor #3
Statistical analysis of amplified fragment length polymorphism data: a toolbox for molecular ecologists and evolutionists
2007574 citationsauthor #1
Brachiopod coquinas of the Upper Arenig, Montagne Noire, France.
20072 citationsauthor #1
Quantitative Geography and Genomics : Spatial analysis to detect signatures of selection along a gradient of altitude in the common frog (Rana temporaria)
20073 citationsauthor #2
A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation
2007471 citationsauthor #2
Population Adaptive Index: a New Method to Help Measure Intraspecific Genetic Diversity and Prioritize Populations for Conservation
2007234 citationsauthor #1
What conservation stake for the sandmason worm (Lanice conchilega) clusters
20060 citationsauthor #3
Reviewers of Molecular Ecology Papers
20060 citationsauthor #102
Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria).
2006327 citationsauthor #1
Use of amplified fragment length polymorphism (AFLP) markers in surveys of vertebrate diversity.
200548 citationsauthor #1
Genotyping errors: causes, consequences and solutions
20051,211 citationsauthor #2
How to track and assess genotyping errors in population genetics studies
20041,445 citationsauthor #1
Isoprenoid emissions of Quercus spp. (Q. suber and Q. ilex) in mixed stands contrasting in interspecific genetic introgression.
200478 citationsauthor #5
Challenges in assessing adaptive genetic diversity: overview of methods and empirical illustrations
20014 citationsauthor #1

TIMELINE

2001 4 citations

2004 1,523 citations

2005 1,259 citations

2006 327 citations

2007 1,284 citations

2008 449 citations

2009 56 citations

2010 556 citations

2011 113 citations

2012 429 citations

2013 171 citations

2014 296 citations

2015 640 citations

2016 1,281 citations

2017 24 citations

2018 842 citations

2019 663 citations

2020 278 citations

2021 239 citations

2022 102 citations

2023 13 citations

2024 0 citations

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