T. Milenković

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Aliases
T. Milenković, Tijana Milenkovic, Tijana Milenković
Publication record
99 papers · 3,372 citations · H-index 30

PAPERS

Unavailability of experimental 3D structural data on protein folding dynamics and necessity for a new generation of structure prediction methods in this context.
20261 citationsauthor #5
ISMB/ECCB 2025 Proceedings
20251 citationsauthor #2
Synonymous codon substitutions modulate transcription and translation of a divergent upstream gene by modulating antisense RNA production
202411 citationsauthor #8
ISMB 2024 Proceedings
20240 citationsauthor #1
Enhancing Gene Co-Expression Network Inference for the Malaria Parasite Plasmodium falciparum
20233 citationsauthor #8
Supplementary information for “Modeling multi-scale data via a network of networks”
20220 citationsauthor #4
Synonymous codon substitutions regulate transcription and translation of an upstream gene
20222 citationsauthor #6
Multi‐layer sequential network analysis improves protein 3D structural classification
20227 citationsauthor #6
Dynamic network analysis improves protein 3D structural classification
20210 citationsauthor #6
Improved supervised prediction of aging-related genes via weighted dynamic network analysis
202110 citationsauthor #3
Modeling multi-scale data via a network of networks
202139 citationsauthor #4
Supervised Prediction of Aging-Related Genes From a Context-Specific Protein Interaction Subnetwork
20213 citationsauthor #2
CHARMING: Harmonizing synonymous codon usage to replicate a desired codon usage pattern
202120 citationsauthor #4
Data-driven biological network alignment that uses topological, sequence, and functional information
20206 citationsauthor #2
Analysis of computational codon usage models and their association with translationally slow codons
20209 citationsauthor #5
Supplementary material from "Network-based protein structural classification"
20200 citationsauthor #5
Improving supervised prediction of aging-related genes via dynamic network analysis
20204 citationsauthor #2
L-HetNetAligner: A novel algorithm for Local Alignment of Heterogeneous Biological Networks
202020 citationsauthor #2
Code and data for: Network-based protein structural classification
20201 citationsauthor #5
Author Correction: GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison
20209 citationsauthor #7
Inference of a Dynamic Aging-related Biological Subnetwork via Network Propagation
20206 citationsauthor #2
Weighted graphlets and deep neural networks for protein structure classification
20196 citationsauthor #4
Data-driven network alignment
201916 citationsauthor #2
J ul 2 01 9 Network analysis of synonymous codon usage
20190 citationsauthor #8
The power of dynamic social networks to predict individuals’ mental health
20199 citationsauthor #6
Network analysis of synonymous codon usage
201910 citationsauthor #7
Temporal network alignment via GoT-WAVE
201923 citationsauthor #3
Heterogeneous Network Approach to Predict Individuals’ Mental Health
201917 citationsauthor #7
Fe b 20 19 Network-based protein structural classification
20190 citationsauthor #5
Network analysis of the NetHealth data: exploring co-evolution of individuals’ social network positions and physical activities
201815 citationsauthor #6
Improving inference of the dynamic biological network underlying aging via network propagation
20183 citationsauthor #2
Aligning dynamic networks with DynaWAVE
201821 citationsauthor #2
Great Lakes Bioinformatics Conference GLBIO 2015 Special Section Editorial
20180 citationsauthor #1
Network-based protein structural classification
201820 citationsauthor #4
ClueNet: Clustering a temporal network based on topological similarity rather than denseness
201829 citationsauthor #2
GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison
20186 citationsauthor #7
GoT-WAVE: Temporal network alignment using graphlet-orbit transitions
20182 citationsauthor #3
Graphlets versus node2vec and struc2vec in the task of network alignment
201812 citationsauthor #2
Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin
2017122 citationsauthor #2
From homogeneous networks to heterogeneous networks of networks via colored graphlets
20171 citationsauthor #4
From homogeneous to heterogeneous network alignment via colored graphlets
201744 citationsauthor #4
Alignment of dynamic networks
201738 citationsauthor #3
GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison
201735 citationsauthor #7
Improving Identification of Key Players in Aging via Network De-Noising and Core Inference
20178 citationsauthor #4
Pairwise Versus Multiple Global Network Alignment
201715 citationsauthor #5
Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment‐free network comparison methods
20174 citationsauthor #3
Supplementary material : Alignment of dynamic networks
20170 citationsauthor #3
Pioneering topological methods for network-based drug–target prediction by exploiting a brain-network self-organization theory
201757 citationsauthor #1
On the Interplay Between Individuals’ Evolving Interaction Patterns and Traits in Dynamic Multiplex Social Networks
201629 citationsauthor #4
IGLOO: Integrating global and local biological network alignment
201621 citationsauthor #4
Genome-wide profiling of 24 hr diel rhythmicity in the water flea, Daphnia pulex: network analysis reveals rhythmic gene expression and enhances functional gene annotation
201626 citationsauthor #10
Genome-wide profiling of 24 hr diel rhythmicity in the water flea, Daphnia pulex: network analysis reveals rhythmic gene expression and enhances functional gene annotation
20163 citationsauthor #10
Network approach integrates 3D structural and sequence data to improve protein structural comparison
20160 citationsauthor #7
SCOUT: simultaneous time segmentation and community detection in dynamic networks
201618 citationsauthor #2
Network approach integrates 3D structural and sequence data to improve protein classification
20160 citationsauthor #5
Multiple Network Alignment via MultiMAGNA++
201683 citationsauthor #2
Global Network Alignment in the Context of Aging
201577 citationsauthor #3
Novel directions for biological network alignment – MAGNA
20150 citationsauthor #1
Proper evaluation of alignment-free network comparison methods
201566 citationsauthor #2
Local versus global biological network alignment
201577 citationsauthor #3
Systems biology MAGNA 11 : Maximizing Accuracy in Global Network Alignment via both node and edge conservation
201524 citationsauthor #3
The post-genomic era of biological network alignment
201587 citationsauthor #4
MAGNA++: Maximizing Accuracy in Global Network Alignment via both node and edge conservation
2015156 citationsauthor #3
Global network alignment in the context of aging
20144 citationsauthor #3
Simultaneous Optimization of both Node and Edge Conservation in Network Alignment via WAVE
201475 citationsauthor #4
Choi Graphene Driven Domain Imaging on Exfoliated Monolayer − Friction Anisotropy
20140 citationsauthor #36
Networks' Characteristics Matter for Systems Biology.
20142 citationsauthor #2
Exploring the structure and function of temporal networks with dynamic graphlets
201463 citationsauthor #3
Fair evaluation of global network aligners
201433 citationsauthor #3
Systematic Dynamic and Heterogeneous Analysis of Rich Social Network Data
201417 citationsauthor #2
Improving identification of key players in aging via network de-noising
20145 citationsauthor #4
Networks' characteristics are important for systems biology
20145 citationsauthor #2
Revealing Missing Parts of the Interactome via Link Prediction
201432 citationsauthor #3
GREAT: GRaphlet Edge-based network AlignmenT
201436 citationsauthor #2
Dynamic networks reveal key players in aging
20148 citationsauthor #2
Using Global Network Alignment In The Context Of Aging
20132 citationsauthor #1
Global Network Alignment In The Context Of Aging
20136 citationsauthor #1
Dynamic networks reveal key players in aging
201394 citationsauthor #2
Network Analysis Improves Interpretation of Affective Physiological Data
201310 citationsauthor #4
MAGNA: Maximizing Accuracy in Global Network Alignment
2013196 citationsauthor #2
Topological Characteristics of Molecular Networks
20129 citationsauthor #1
Identifying edge clusters in networks via edge graphlet degree vectors (edge-GDVs) and edge-GDV-similarities
20122 citationsauthor #3
Graphlet-based edge clustering reveals pathogen-interacting proteins
201279 citationsauthor #3
Dominating Biological Networks
2011119 citationsauthor #1
Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets
201039 citationsauthor #2
Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data
2010102 citationsauthor #1
Optimal Network Alignment with Graphlet Degree Vectors
2010211 citationsauthor #1
Complementarity of network and sequence information in homologous proteins
201032 citationsauthor #2
Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy.
201053 citationsauthor #2
From topological network analyses and alignments to biological function, disease, and evolution
20101 citationsauthor #2
Computational Methods for Analyzing and Modeling Biological Networks
200910 citationsauthor #2
An integrative approach to modeling biological networks
200926 citationsauthor #2
M ay 2 00 9 An integrative approach to modelling biological networks
20090 citationsauthor #2
Optimized Null Model for Protein Structure Networks
200952 citationsauthor #1
An integrative approach to modelling biological networks
20091 citationsauthor #2
Topological network alignment uncovers biological function and phylogeny
2008451 citationsauthor #2
GraphCrunch: A tool for large network analyses
2008118 citationsauthor #1
Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis
2008151 citationsauthor #2
Geometricity of Residue Interaction Graphs
20070 citationsauthor #1

TIMELINE

2007 0 citations

2008 720 citations

2009 89 citations

2010 438 citations

2011 119 citations

2012 90 citations

2013 308 citations

2014 280 citations

2015 487 citations

2016 180 citations

2017 324 citations

2018 108 citations

2019 81 citations

2020 55 citations

2021 72 citations

2022 9 citations

2023 3 citations

2024 11 citations

2025 1 citations

2026 1 citations

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