D. Macqueen

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Aliases
Daniel Macqueen, D. J. Macqueen, Daniel J. Macqueen, D.j. Macqueen, Daniel John Macqueen, Dan Macqueen, Daniel J Macqueen
Publication record
90 papers · 3,663 citations · H-index 30

PAPERS

Advancing fish breeding in aquaculture through genome functional annotation
202429 citationsauthor #15
Multiomics uncovers the epigenomic and transcriptomic response to viral and bacterial stimulation in turbot
20242 citationsauthor #9
Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor
202340 citationsauthor #4
Phylogenetic origins of the complement system in the ancestor of animals
20230 citationsauthor #4
Single cell genomics as a transformative approach for aquaculture research and innovation
202326 citationsauthor #4
Organized B cell selection sites in cartilaginous fishes reveal the evolutionary foundation of germinal center-based selection
20231 citationsauthor #8
Regulation of core interferon response genes in Atlantic salmon in response to Poly I:C
20230 citationsauthor #5
Conserved and divergent arms of the antiviral response in the duplicated genomes of salmonid fishes.
202314 citationsauthor #7
High performance imputation of structural and single nucleotide variants 1 in Atlantic salmon using low-coverage whole genome sequencing
20230 citationsauthor #6
Organized B cell sites in cartilaginous fishes reveal the evolutionary foundation of germinal centers
202327 citationsauthor #8
Extensive lineage-specific rediploidisation masks shared whole genome duplication in the sturgeon-paddlefish ancestor
20224 citationsauthor #3
Exploration of the Nurse Shark (Ginglymostoma cirratum) Plasma Immunoproteome Using High-Resolution LC-MS/MS
20226 citationsauthor #5
Chromosome‐level reference genome for European flat oyster (Ostrea edulis L.)
202226 citationsauthor #8
Evolution of ray-finned fish genomes: Status and directions with a primer on microRNA characterization
20223 citationsauthor #5
Single cell transcriptomics of Atlantic salmon (Salmo salar L.) liver reveals cellular heterogeneity and immunological responses to challenge by Aeromonas salmonicida
202234 citationsauthor #9
Genome-Wide Association and Genomic Prediction of Growth Traits in the European Flat Oyster (Ostrea edulis)
202220 citationsauthor #12
Two parallel chromosome‐level reference genomes to support restoration and aquaculture of European flat oyster Ostrea edulis
20222 citationsauthor #7
A single genomic region involving a putative chromosome rearrangement in flat oyster (Ostrea edulis) is associated with differential host resilience to the parasite Bonamia ostreae
202210 citationsauthor #6
Genomic Epidemiology of Salmonid Alphavirus in Norwegian Aquaculture Reveals Recent Subtype-2 Transmission Dynamics and Novel Subtype-3 Lineages
20217 citationsauthor #1
Genome-Wide Reconstruction of Rediploidization Following Autopolyploidization across One Hundred Million Years of Salmonid Evolution
202145 citationsauthor #9
Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication
202154 citationsauthor #10
Comparative regulomics reveals pervasive selection on gene dosage following whole genome duplication
20206 citationsauthor #10
From FAANG to fork: application of highly annotated genomes to improve farmed animal production
2020105 citationsauthor #9
Genome-wide target enriched viral sequencing reveals extensive ‘hidden’ salmonid alphavirus diversity in farmed and wild fish populations
20206 citationsauthor #4
Plasma Proteome Responses in Salmonid Fish Following Immunization
202013 citationsauthor #6
Arginine, ornithine and citrulline supplementation in rainbow trout: Free amino acid dynamics and gene expression responses to bacterial infection.
202021 citationsauthor #4
Nanopore whole genome sequencing and partitioned phylogenetic analysis supports a new salmonid alphavirus genotype (SAV7).
202015 citationsauthor #6
From FAANG to fork: application of highly annotated genomes to improve farmed animal production
20208 citationsauthor #9
Genome Sequencing of SAV3 Reveals Repeated Seeding Events of Viral Strains in Norwegian Aquaculture
20205 citationsauthor #6
Harnessing genomics to fast-track genetic improvement in aquaculture
2020451 citationsauthor #3
Long-term, proteome-scale analysis of rainbow trout immune proteins: Implications for aquaculture vaccine development
20190 citationsauthor #8
Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growth
201933 citationsauthor #6
Discovery of All Three Types in Cartilaginous Fishes Enables Phylogenetic Resolution of the Origins and Evolution of Interferons
201958 citationsauthor #4
Gene encoding enzymes in the urea cycle and polyamine synthesis are modulated during an inflammatory response in rainbow trout (Oncorhynchus mykiss)
20190 citationsauthor #3
Phylogenetic Reclassification of Vertebrate Melatonin Receptors To Include Mel1d
201914 citationsauthor #4
The AMPK system of salmonid fishes was expanded through genome duplication and is regulated by growth and immune status in muscle
201916 citationsauthor #5
SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes
201914 citationsauthor #5
Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon
201911 citationsauthor #2
Insulin-Like Growth Factor-Binding Proteins of Teleost Fishes
201889 citationsauthor #2
Nanopore sequencing for rapid diagnostics of salmonid RNA viruses
201830 citationsauthor #6
Growth hormone transgenesis in coho salmon disrupts muscle immune function impacting cross-talk with growth systems
201826 citationsauthor #5
Haptoglobin Is a Divergent MASP Family Member That Neofunctionalized To Recycle Hemoglobin via CD163 in Mammals
201815 citationsauthor #4
Atlantic salmon (Salmo salar L.) genetics in the 21st century: taking leaps forward in aquaculture and biological understanding
201863 citationsauthor #2
High-throughput proteomic profiling of the fish liver following bacterial infection
201873 citationsauthor #6
Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets
201826 citationsauthor #2
Growth hormone transgenesis disrupts immune function in muscle of coho salmon (Oncorhynchus kisutch) impacting cross-talk with growth systems
20175 citationsauthor #5
Functional Annotation of All Salmonid Genomes (FAASG)
20171 citationsauthor #1
Divergent regulation of insulin-like growth factor binding protein genes in cultured Atlantic salmon myotubes under different models of catabolism and anabolism.
201724 citationsauthor #5
Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture
201780 citationsauthor #1
Evolutionary history of the T cell receptor complex as revealed by small‐spotted catshark (Scyliorhinus canicula)
201720 citationsauthor #4
Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification
2017160 citationsauthor #10
Genotype-specific immune response in cold water fish(Transcriptomic analysis of immune response in wild, domesticated, and growth hormone transgenic salmon)
20160 citationsauthor #2
Development of a proteomic platform to facilitate the generation of new and improved aquaculture vaccines
20160 citationsauthor #4
Targeted sequencing for high-resolution evolutionary analyses following genome duplication in salmonid fish: Proof of concept for key components of the insulin-like growth factor axis.
201620 citationsauthor #3
Corrigendum: Disparate developmental patterns of immune responses to bacterial and viral infections in fish
20160 citationsauthor #4
Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture
20163 citationsauthor #1
The complete salmonid IGF-IR gene repertoire and its transcriptional response to disease
201617 citationsauthor #3
Growth hormone transgenesis influences muscle proteome of Coho salmon (Oncorhynchus kisutch)
20160 citationsauthor #3
Individual monitoring of salmonid immune responses during immunisation and infection
20160 citationsauthor #5
Growth and immunity cross-talk in rainbow trout: Suppression of the insulin-like growth factor system during infection
20160 citationsauthor #6
Cross Talk Between Growth and Immunity: Coupling of the IGF Axis to Conserved Cytokine Pathways in Rainbow Trout.
201644 citationsauthor #6
Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota
2015100 citationsauthor #7
Disparate developmental patterns of immune responses to bacterial and viral infections in fish
201559 citationsauthor #4
The vertebrate muscle‐specific RING finger protein family includes MuRF4 – A novel, conserved E3‐ubiquitin ligase
201411 citationsauthor #1
species diversification whole genome duplication reveals major decoupling from A well-constrained estimate for the timing of the salmonid
20142 citationsauthor #1
analyses vertebrates using phylogenetic , evolutionary and expression Characterization of the definitive classical calpain family of Supplementary data
20140 citationsauthor #1
Cardiac myoglobin deficit has evolved repeatedly in teleost fishes
201421 citationsauthor #1
A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification
2014407 citationsauthor #1
Universal scaling rules predict evolutionary patterns of myogenesis in species with indeterminate growth
201218 citationsauthor #5
The parallel evolution of dwarfism in Arctic charr is accompanied by adaptive divergence in mTOR‐pathway gene expression
201146 citationsauthor #1
Growth and the regulation of myotomal muscle mass in teleost fish
2011461 citationsauthor #3
Functional Analysis of Sequence Variation Salmonid genomes have a remarkably expanded akirin family , coexpressed with genes from conserved pathways governing skeletal muscle growth and catabolism
20100 citationsauthor #1
Positioning the expanded akirin gene family of Atlantic salmon within the transcriptional networks of myogenesis.
201036 citationsauthor #1
A newly classified vertebrate calpain protease, directly ancestral to CAPN1 and 2, episodically evolved a restricted physiological function in placental mammals.
201043 citationsauthor #1
Salmonid genomes have a remarkably expanded akirin family, coexpressed with genes from conserved pathways governing skeletal muscle growth and catabolism.
201049 citationsauthor #1
Characterisation of capn1, capn2-like, capn3 and capn11 genes in Atlantic halibut (Hippoglossus hippoglossus L.): Transcriptional regulation across tissues and in skeletal muscle at distinct nutritional states.
201029 citationsauthor #1
Embryonic temperature affects muscle fibre recruitment in adult zebrafish: genome-wide changes in gene and microRNA expression associated with the transition from hyperplastic to hypertrophic growth phenotypes
2009170 citationsauthor #3
Evolution of the multifaceted eukaryotic akirin gene family
200993 citationsauthor #1
Genomic, evolutionary, and expression analyses of cee, an ancient gene involved in normal growth and development.
200813 citationsauthor #2
Molecular Biotechnology of Development and Growth in Fish Muscle
200829 citationsauthor #2
Embryonic temperature and the genes regulating myogenesis in teleosts
20080 citationsauthor #1
An Update on MyoD Evolution in Teleosts and a Proposed Consensus Nomenclature to Accommodate the Tetraploidization of Different Vertebrate Genomes
200847 citationsauthor #1
Temperature until the ‘eyed stage’ of embryogenesis programmes the growth trajectory and muscle phenotype of adult Atlantic salmon
200895 citationsauthor #1
Evolution of follistatin in teleosts revealed through phylogenetic, genomic and expression analyses
200734 citationsauthor #1
Phylogeny and evolution of cee, an ancient gene of unknown function
20070 citationsauthor #2
Temperature influences the coordinated expression of myogenic regulatory factors during embryonic myogenesis in Atlantic salmon (Salmo salar L.)
200741 citationsauthor #1
Characterization and expression of cee, a highly conserved and novel gene of unknown function
20071 citationsauthor #1
The transcriptional networks regulating myogenesis in Atlantic salmon (Salmo salar L.) and the effect of embryonic temperature
20070 citationsauthor #1
A novel salmonid myoD gene is distinctly regulated during development and probably arose by duplication after the genome tetraploidization
200641 citationsauthor #1
Corrigendum to “A novel salmonid myoD gene is distinctly regulated during development and probably arose by duplication after the genome tetraploidization” [FEBS Lett. 580 (2006) 4996–5002]
20062 citationsauthor #1

TIMELINE

2006 43 citations

2007 76 citations

2008 184 citations

2009 263 citations

2010 157 citations

2011 507 citations

2012 18 citations

2014 441 citations

2015 159 citations

2016 84 citations

2017 290 citations

2018 322 citations

2019 146 citations

2020 630 citations

2021 106 citations

2022 105 citations

2023 108 citations

2024 31 citations

D. Macqueen

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