Genome wide association mapping of agro-morphological and disease resistance traits in sugarcane

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Euphytica

• Publication date

  2014-11-01

• Fields of study

  Agricultural and Food Sciences, Biology

• Identifiers
  DOI 10.1007/s10681-014-1294-y
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• R: A language and environment for statistical computing.

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  2000influential reference
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  2000influential reference
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  1999cited by this paper
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  1999influential reference
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  1998cited by this paper
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  1996influential reference
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  1996influential reference
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  1995cited by this paper
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  1995cited by this paper
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