Use of DNA length variation to detect periodicities in positively cooperative, nonspecific binding.

No abstract is available for this paper.

• Publication year

  2009

• Venue

  Methods in Enzymology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1016/S0076-6879(09)66004-3PMID 21609858
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Filter-binding assays.

  2009cited by this paper
• Topologies of complexes containing O6-alkylguanine-DNA alkyltransferase and DNA.

  2009cited by this paper
• Interactions of human O(6)-alkylguanine-DNA alkyltransferase (AGT) with short double-stranded DNAs.

  2008cited by this paper
• The role of high affinity non-specific DNA binding by Lrp in transcriptional regulation and DNA organization.

  2007cited by this paper
• Analysis of Protein-DNA Equilibria by Native Gel Electrophoresis

  2007cited by this paper
• H-NS cooperative binding to high-affinity sites in a regulatory element results in transcriptional silencing

  2007cited by this paper
• Electrophoretic mobility shift assay (EMSA) for detecting protein–nucleic acid interactions

  2007cited by this paper
• Interactions of Human O6-Alkylguanine-DNA Alkyltransferase (AGT) with Short Single-stranded DNAs*

  2007cited by this paper
• Oligomeric states of proteins determined by size-exclusion chromatography coupled with light scattering, absorbance, and refractive index detectors.

  2006cited by this paper
• The structure of the human AGT protein bound to DNA and its implications for damage detection.

  2005cited by this paper
• Global analysis of non-specific protein-nucleic interactions by sedimentation equilibrium.

  2004cited by this paper
• Revised UV extinction coefficients for nucleoside-5'-monophosphates and unpaired DNA and RNA.

  2004cited by this paper
• Analysis of heterogeneous interactions.

  2004cited by this paper
• DNA binding and nucleotide flipping by the human DNA repair protein AGT

  2004cited by this paper
• An Escherichia coli MutY Mutant without the Six-helix Barrel Domain Is a Dimer in Solution and Assembles Cooperatively into Multisubunit Complexes with DNA*

  2004cited by this paper
• Application of the continuous variation method to cooperative interactions: mechanism of Fe(II)-ferrozine chelation and conditions leading to anomalous binding ratios.

  2002cited by this paper
• O6-alkylguanine-DNA alkyltransferase: role in carcinogenesis and chemotherapy.

  2002cited by this paper
• Analytic binding isotherms describing competitive interactions of a protein ligand with specific and nonspecific sites on the same DNA oligomer.

  2001cited by this paper
• Online size-exclusion high-performance liquid chromatography light scattering and differential refractometry methods to determine degree of polymer conjugation to proteins and protein-protein or protein-ligand association states.

  2001cited by this paper
• Repair of O6-alkylguanine by alkyltransferases

  2000cited by this paper
• Mechanism of kappa B DNA binding by Rel/NF-kappa B dimers.

  2000cited by this paper
• Repair of O(6)-alkylguanine by alkyltransferases.

  2000cited by this paper
• Mechanism of κB DNA binding by Rel/NF-κB dimers*

  2000cited by this paper
• Electrophoretic analysis of multiple protein‐DNA interactions

  1998cited by this paper
• Factors that affect the stability of protein‐DNA complexes during gel electrophoresis

  1997cited by this paper
• DNA binding mechanism of O6-alkylguanine-DNA alkyltransferase: stoichiometry and effects of DNA base composition and secondary structure on complex stability.

  1996cited by this paper
• Sedimentation equilibrium as thermodynamic tool.

  1995cited by this paper
• The Stoichiometry of Binding of the Herpes Simplex Virus Type 1 Origin Binding Protein, UL9, to OriS(*)

  1995cited by this paper
• Energetics of arginine-4 substitution mutants in the N-terminal cooperativity domain of T4 gene 32 protein.

  1993cited by this paper
• Analytical ultracentrifugation in biochemistry and polymer science

  1992cited by this paper
• Use of binding site neighbor-effect parameters to evaluate the interactions between adjacent ligands on a linear lattice. Effects on ligand-lattice association.

  1992cited by this paper
• EcoRV restriction endonuclease binds all DNA sequences with equal affinity.

  1991cited by this paper
• Cooperativity and specificity in the interactions between DNA and the glucocorticoid receptor DNA-binding domain.

  1990cited by this paper
• On the cooperative binding of large ligands to a one‐dimensional homogeneous lattice: The generalized three‐state lattice model

  1989cited by this paper
• Cooperative DNA binding by Xenopus transcription factor IIIA. Use of a 66-base pair DNA fragment containing the intragenic control region of the 5 S RNA gene to study specific and nonspecific interactions.

  1989cited by this paper
• Cooperative interaction of histone H1 with DNA.

  1986cited by this paper
• Cooperative effects on binding of proteins to DNA.

  1986cited by this paper
• CAP and RNA polymerase interactions with the lac promoter: binding stoichiometry and long range effects

  1983cited by this paper
• On the determination of deoxyribonucleic acid-protein interaction parameters using the nitrocellulose filter-binding assay.

  1983cited by this paper
• On the determination of deoxyribonucleic acid-protein interaction parameters using the nitrocellulose filter-binding assay

  1983cited by this paper
• Determination of binding stoichiometry by the continuous variation method: the Job plot.

  1982cited by this paper
• Analysis of data from the analytical ultracentrifuge by nonlinear least-squares techniques.

  1981cited by this paper
• A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system

  1981cited by this paper
• Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis.

  1981cited by this paper
• Fractionation of low molecular weight DNA or RNA in polyacrylamide gels containing 98% formamide or 7 M urea.

  1980cited by this paper
• Cooperative binding to DNA of catabolite activator protein of Escherichia coli.

  1979cited by this paper
• Non-specific interactions of CRP from E. coli with native and denatured DNAs: control of binding by cAMP and cGMP and by cation concentration.

  1979cited by this paper
• Cooperative and non-cooperative binding of large ligands to a finite one-dimensional lattice. A model for ligand-oligonucleotide interactions.

  1978cited by this paper
• Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice.

  1974cited by this paper
• Deoxyribonueleate solutions: Sedimentation in a density gradient, partial specific volumes, density and refractive index increments, and preferential interactions

  1968cited by this paper
• Protein-nucleic acid interactions. II. Oligopeptide-polyribonucleotide binding studies.

  1967cited by this paper
• Absorption and optical rotatory dispersion of seven trinucleoside diphosphates.

  1965cited by this paper
• Proteins, amino acids and peptides as ions and dipolar ions

  1943cited by this paper

• Quaternary interactions and supercoiling modulate the cooperative DNA binding of AGT

  2017cites this paper
• Thermodynamics of DNA Binding by DNA Polymerase I and RecA Recombinase from Deinococcus radiodurans

  2014cites this paper
• Cooperative cluster formation, DNA bending and base-flipping by O6-alkylguanine-DNA alkyltransferase

  2012cites this paper
• Lesion-specific DNA-binding and repair activities of human O6-alkylguanine DNA alkyltransferase

  2012cites this paper
• 6-Carboxyfluorescein and structurally similar molecules inhibit DNA binding and repair by O⁶-alkylguanine DNA alkyltransferase.

  2011cites this paper