Mitochondrial Genome of the Stonefly Kamimuria wangi (Plecoptera: Perlidae) and Phylogenetic Position of Plecoptera Based on Mitogenomes

This study determined the mitochondrial genome sequence of the stonefly, Kamimuria wangi. In order to investigate the relatedness of stonefly to other members of Neoptera, a phylogenetic analysis was undertaken based on 13 protein-coding genes of mitochondrial genomes in 13 representative insects. The mitochondrial genome of the stonefly is a circular molecule consisting of 16,179 nucleotides and contains the 37 genes typically found in other insects. A 10-bp poly-T stretch was observed in the A+T-rich region of the K. wangi mitochondrial genome. Downstream of the poly-T stretch, two regions were located with potential ability to form stem-loop structures; these were designated stem-loop 1 (positions 15848–15651) and stem-loop 2 (15965–15998). The arrangement of genes and nucleotide composition of the K. wangi mitogenome are similar to those in Pteronarcys princeps, suggesting a conserved genome evolution within the Plecoptera. Phylogenetic analysis using maximum likelihood and Bayesian inference of 13 protein-coding genes supported a novel relationship between the Plecoptera and Ephemeroptera. The results contradict the existence of a monophyletic Plectoptera and Plecoptera as sister taxa to Embiidina, and thus requires further analyses with additional mitogenome sampling at the base of the Neoptera.

• Publication year

  2014

• Venue

  PLoS ONE

• Publication date

  2014-01-23

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1371/journal.pone.0086328PMID 24466028PMCID 3900512
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2010cited by this paper
• The occurrence of hemocyanin in Hexapoda

  2009influential reference
• The complete mitochondrial genome of Diadegma semiclausum (hymenoptera: ichneumonidae) indicates extensive independent evolutionary events.

  2009cited by this paper
• Complete Sequencing and Analysis of mtDNA in Phlaeoba albonema Zheng

  2008cited by this paper
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  2008cited by this paper
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  2007cited by this paper
• Clustal W and Clustal X version 2.0

  2007cited by this paper
• Insect mitochondrial genomics 2: The complete mitochondrial genome sequence of a giant stonefly, Pteronarcys princeps, asymmetric directional mutation bias, and conserved plecopteran A+T-region elements.

  2006cited by this paper
• Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA

  2006cited by this paper
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  2005cited by this paper
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  2004cited by this paper
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  2003cited by this paper
• The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

  2002cited by this paper
• The Phylogeny of the Extant Hexapod Orders

  2001influential reference
• Surface‐Skimming Stoneflies and Mayflies: The Taxonomic and Mechanical Diversity of Two‐Dimensional Aerodynamic Locomotion*

  2000cited by this paper
• Phylogenetic system and zoogeography of the Plecoptera.

  2000cited by this paper
• Animal mitochondrial genomes.

  1999cited by this paper
• Defining and measuring river health

  1999cited by this paper
• Inferences about orthopteroid phylogeny and molecular evolution from small subunit nuclear ribosomal DNA sequences

  1998cited by this paper
• tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

  1997cited by this paper
• Insect mitochondrial control region: A review of its structure, evolution and usefulness in evolutionary studies

  1997cited by this paper
• Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes

  1995cited by this paper
• Evolution and structural conservation of the control region of insect mitochondrial DNA

  1995cited by this paper
• Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers

  1994cited by this paper
• CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

  1994cited by this paper
• Nymphs of North American Stonefly Genera (Plecoptera)

  1993cited by this paper
• Fossil history and the evolution of Hexapod structures

  1991cited by this paper
• Styloperlidae, stat. nov. and Microperlinae, subfam. nov. with a revised system of the family group Systellognatha (Plecoptera)

  1989cited by this paper
• Arthropod Phylogeny with Special Reference to Insects

  1979influential reference
• Insecta: Plecoptera. Phylogenetisches System und Katalog

  1973cited by this paper
• Insect Phylogeny

  1970cited by this paper

• Conservation and Variability in Mitochondrial Genomes of Perlodidae: Insights from Comparative Mitogenomics

  2025cites this paper
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  2024cites this paper
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  2023cites this paper
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  2020cites this paper
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  2019cites this paper
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  2019cites this paper
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  2019cites this paper
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  2019cites this paper
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  2018cites this paper
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  2018cites this paper
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  2018cites this paper
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  2017cites this paper
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  2017cites this paper
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  2016influential citation
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  2016influential citation
• Progress, pitfalls and parallel universes: a history of insect phylogenetics

  2016cites this paper
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  2015cites this paper
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  2015cites this paper