Pash 2.0: Scaleable Sequence Anchoring for Next-Generation Sequencing Technologgies

No abstract is available for this paper.

• Publication year

  2007

• Venue

  Pacific Symposium on Biocomputing

• Publication date

  2007-12-01

• Fields of study

  Medicine, Computer Science

• Identifiers
  DOI 10.1142/9789812776136_0012PMID 18229679
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Human-Specific Changes of Genome Structure Detected by Genomic Triangulation

  2007cited by this paper
• BAC end sequencing.

  2004cited by this paper
• Patternhunter Ii: Highly Sensitive and Fast Homology Search

  2004cited by this paper
• Pash: efficient genome-scale sequence anchoring by Positional Hashing.

  2004influential reference
• A cattle-human comparative map built with cattle BAC-ends and human genome sequence.

  2003cited by this paper
• Human-mouse alignments with BLASTZ.

  2003cited by this paper
• BLAT--the BLAST-like alignment tool.

  2002cited by this paper
• Construction and Analysis of a Human-Chimpanzee Comparative Clone Map

  2002cited by this paper
• PatternHunter: faster and more sensitive homology search

  2002cited by this paper
• SSAHA: A Fast Search Method for Large DNA Databases

  2001influential reference
• SSAHA: a fast search method for large DNA databases.

  2001cited by this paper
• The pacific symposium on biocomputing

  1998cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997influential reference
• Rapid and sensitive sequence comparison with FASTP and FASTA.

  1990cited by this paper
• Basic local alignment search tool.

  1990cited by this paper
• Improved tools for biological sequence comparison.

  1988cited by this paper

• Integrating Epigenomics into the Understanding of Biomedical Insight

  2016cites this paper
• Personal genome analysis: a tread towards personalised medicine

  2014cites this paper
• Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing

  2014cites this paper
• Sequence Alignment, Analysis, and Bioinformatic Pipelines

  2013cites this paper
• High Performance Multiple Sequence Alignment System for Pyrosequencing Reads from Multiple Reference Genomes.

  2012cites this paper
• Genomic Hypomethylation in the Human Germline Associates with Selective Structural Mutability in the Human Genome

  2012cites this paper
• Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain

  2011cites this paper
• Simrank: Rapid and sensitive general-purpose k-mer search tool

  2011cites this paper
• A genome-wide search for promoters that respond to increased MYCN reveals both new oncogenic and tumor suppressor microRNAs associated with aggressive neuroblastoma.

  2011influential citation
• Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing

  2010cites this paper
• GAPM – A Robust Algorithm for the Physical Mapping Problem

  2010cites this paper
• MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing.

  2010cites this paper
• Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications

  2010cites this paper
• Next generation sequencing based approaches to epigenomics.

  2010cites this paper
• Application of 'next-generation' sequencing technologies to microbial genetics

  2009cites this paper
• GASZ Is Essential for Male Meiosis and Suppression of Retrotransposon Expression in the Male Germline

  2009cites this paper
• Simultaneous alignment of short reads against multiple genomes

  2009cites this paper
• Evolutionary Breakpoints in the Gibbon Suggest Association between Cytosine Methylation and Karyotype Evolution

  2009cites this paper