Knotting dynamics during DNA replication

No abstract is available for this paper.

• Publication year

  2002

• Venue

  Molecular Microbiology

• Publication date

  2002-11-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1046/j.1365-2958.2002.03217.xPMID 12410827
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Mechanisms of separation of the complementary strands of DNA during replication

  2004cited by this paper
• Supercoiling, knotting and replication fork reversal in partially replicated plasmids.

  2002cited by this paper
• Topoisomerase IV, alone, unknots DNA in E. coli.

  2001cited by this paper
• Topoisomerase II can unlink replicating DNA by precatenane removal

  2001cited by this paper
• Localization of breakage points in knotted strings

  2001cited by this paper
• Novel display of knotted DNA molecules by two-dimensional gel electrophoresis

  2001cited by this paper
• Positive Torsional Strain Causes the Formation of a Four-way Junction at Replication Forks*

  2001cited by this paper
• Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements.

  2000cited by this paper
• Premature termination of DNA replication in plasmids carrying two inversely oriented ColE1 origins.

  2000cited by this paper
• Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays.

  2000cited by this paper
• Hemicatenanes form upon inhibition of DNA replication.

  2000cited by this paper
• Knot what we thought before: the twisted story of replication.

  1999influential reference
• Formation of knots in partially replicated DNA molecules.

  1999cited by this paper
• Geometry and physics of catenanes applied to the study of DNA replication.

  1998influential reference
• The structure of supercoiled intermediates in DNA replication.

  1998influential reference
• Topological complexity of different populations of pBR322 as visualized by two-dimensional agarose gel electrophoresis.

  1998cited by this paper
• DNA gyrase and topoisomerase IV: biochemical activities, physiological roles during chromosome replication, and drug sensitivities.

  1998cited by this paper
• Sedimentation and electrophoretic migration of DNA knots and catenanes.

  1998cited by this paper
• DnaB Helicase Is Unable to Dissociate RNA-DNA Hybrids

  1998cited by this paper
• Mechanistic Studies on the Impact of Transcription on Sequence-specific Termination of DNA Replication and Vice Versa*

  1998cited by this paper
• A computer model for the analysis of DNA replication intermediates by two-dimensional agarose gel electrophoresis.

  1998cited by this paper
• When helicase and topoisomerase meet!

  1997cited by this paper
• Electrophoretic mobility of DNA knots.

  1996cited by this paper
• Electrophoretic mobility of DNA knots

  1996cited by this paper
• Inactivation of topoisomerase I or II may lead to recombination or to aberrant replication termination on both SV40 and yeast 2 μm DNA

  1996cited by this paper
• The ColE1 Unidirectional Origin Acts as a Polar Replication Fork Pausing Site*

  1996cited by this paper
• Two distinct modes of strand unlinking during theta-type DNA replication.

  1996cited by this paper
• Two Distinct Modes of Strand Unlinking during θ-Type DNA Replication*

  1996cited by this paper
• 6 Mechanisms for Completing DNA Replication

  1996cited by this paper
• Analysis of replication intermediates by two-dimensional agarose gel electrophoresis.

  1995cited by this paper
• Unlinking of DNA by Topoisomerases During DNA Replication

  1995cited by this paper
• Topoisomerase IV can support oriC DNA replication in vitro.

  1994cited by this paper
• Roles of supercoiled DNA structure in DNA transactions

  1992cited by this paper
• DNA replication, 2nd edn

  1992cited by this paper
• Initiation of DNA replication in ColE1 plasmids containing multiple potential origins of replication.

  1992cited by this paper
• Unidirectional replication as visualized by two-dimensional agarose gel electrophoresis.

  1991cited by this paper
• Supercoiled DNA-directed knotting by T4 topoisomerase.

  1991cited by this paper
• The replication terminator protein of E. coli is a DNA sequence-specific contra-helicase.

  1989cited by this paper
• Identification of the DNA sequence from the E. coli terminus region that halts replication forks.

  1988cited by this paper
• The localization of replication origins on ARS plasmids in S. cerevisiae.

  1987cited by this paper
• Homologous pairing of DNA molecules by Ustilago rec1 protein is promoted by sequences of Z-DNA.

  1986cited by this paper
• Structure of replicating simian virus 40 minichromosomes. The replication fork, core histone segregation and terminal structures.

  1986cited by this paper
• Determination of the absolute handedness of knots and catenanes of DNA

  1983cited by this paper
• Separation of branched from linear DNA by two-dimensional gel electrophoresis.

  1983cited by this paper
• Synapsis and the formation of paranemic joints by E. coli RecA protein.

  1983cited by this paper
• Homologous pairing and topological linkage of DNA molecules by combined action of E. coli RecA protein and topoisomerase I.

  1981cited by this paper
• TOPOISOMERASES AND THE SWIVEL PROBLEM

  1980influential reference
• The topology of homologous pairing promoted by RecA protein.

  1980cited by this paper

• Tuning Knot Size of Knotted Circular Semiflexible Polyelectrolyte via Salt Concentration

  2025cites this paper
• Dynamics of Double-Knotted DNA Molecules under Nanochannel Confinement

  2024cites this paper
• Role of Supercoiling and Topoisomerases in DNA Knotting

  2024cites this paper
• Diffusion of knots in nanochannel-confined DNA molecules.

  2023cites this paper
• Replication Fork Barriers and Topological Barriers: Progression of DNA Replication Relies on DNA Topology Ahead of Forks

  2020cites this paper
• Neutral-Neutral 2-Dimensional Agarose Gel Electrophoresis for Visualization of E. coli DNA Replication Structures.

  2020cites this paper
• The dark side of RNA:DNA hybrids.

  2020cites this paper
• Closing the DNA replication cycle: from simple circular molecules to supercoiled and knotted DNA catenanes

  2019cites this paper
• Statics and dynamics of DNA knotting

  2018cites this paper
• Analysis of DNA topology of EBV minichromosomes in HEK 293 cells

  2017cites this paper
• The abundance of Fob1 modulates the efficiency of rRFBs to stall replication forks

  2017cites this paper
• Effects of Replication and Transcription on DNA Structure-Related Genetic Instability

  2017cites this paper
• The dynamics and statistics of knots in biopolymers

  2017cites this paper
• Role of Bending Energy and Knot Chirality in Knot Distribution and Their Effective Interaction along Stretched Semiflexible Polymers

  2016cites this paper
• Discretized knot motion on a tensioned fiber induced by transverse waves.

  2016cites this paper
• Replication and transcription on a collision course: eukaryotic regulation mechanisms and implications for DNA stability

  2015cites this paper
• Direct Evidence for the Formation of Precatenanes during DNA Replication*

  2015cites this paper
• Topological Behavior of Plasmid DNA

  2015cites this paper
• Topoisomerase 2 Is Dispensable for the Replication and Segregation of Small Yeast Artificial Chromosomes (YACs)

  2014cites this paper
• Electrophoretic mobility of supercoiled, catenated and knotted DNA molecules

  2014cites this paper
• revie A topological view of the replicon

  2013cites this paper
• Plasmid DNA topology assayed by two-dimensional agarose gel electrophoresis.

  2013cites this paper
• Computational Analysis of DNA Interactions to Investigate the Spatial Organization of Chromatin

  2013cites this paper
• The benefit of DNA supercoiling during replication.

  2013cites this paper
• Title: "The benefit of DNA supercoiling during replication"

  2012cites this paper
• Sedimentation of knotted polymers.

  2012cites this paper
• Senataxin Associates with Replication Forks to Protect Fork Integrity across RNA-Polymerase-II-Transcribed Genes

  2012cites this paper
• 2D gels and their third-dimension potential.

  2012cites this paper
• Topo IV is the topoisomerase that knots and unknots sister duplexes during DNA replication

  2011cites this paper
• Topology of viral DNA

  2010cites this paper
• Biophysics of knotting.

  2010cites this paper
• Plasmid DNA replication and topology as visualized by two-dimensional agarose gel electrophoresis.

  2010cites this paper
• Effect of topology on dynamics of knots in polymers under tension

  2009cites this paper
• Interplay of DNA supercoiling and catenation during the segregation of sister duplexes

  2009cites this paper
• Measurement of DNA morphological parameters at highly entangled regime on surfaces.

  2009cites this paper
• Topological analysis of plasmid DNA replication intermediates using two-dimensional agarose gels.

  2009cites this paper
• A redundancy of processes that cause replication fork stalling enhances recombination at two distinct sites in yeast rDNA

  2008cites this paper
• PU.1 is dispensable to block erythroid differentiation in Friend erythroleukemia cells.

  2008cites this paper
• DNA is more negatively supercoiled in bacterial plasmids than in minichromosomes isolated from budding yeast

  2007cites this paper
• On the Chirality of Torus Curves and Knots

  2007cites this paper
• Sampling large random knots in a confined space

  2007cites this paper
• A topological view of the replicon

  2004cites this paper
• Rad52-Independent Accumulation of Joint Circular Minichromosomes during S Phase in Saccharomyces cerevisiae

  2003cites this paper
• A strand‐specific model for chromosome segregation in bacteria

  2003cites this paper
• Branch migrating sister chromatid junctions form at replication origins through Rad51/Rad52-independent mechanisms.

  2003cites this paper