Genomics in cereals: from genome-wide conserved orthologous set (COS) sequences to candidate genes for trait dissection

No abstract is available for this paper.

• Publication year

  2009

• Venue

  Functional & Integrative Genomics

• Publication date

  2009-07-03

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1007/s10142-009-0129-8PMID 19575250
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The 'inner circle' of the cereal genomes.

  2009cited by this paper
• Growth and development: a broad view of fine detail.

  2009cited by this paper
• Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution[W]

  2008cited by this paper
• Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution

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• New insights into the origin of the B genome of hexaploid wheat: Evolutionary relationships at the SPA genomic region with the S genome of the diploid relative Aegilops speltoides

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• SNP genotyping: technologies and biomedical applications.

  2007cited by this paper
• PCR-based landmark unique gene (PLUG) markers effectively assign homoeologous wheat genes to A, B and D genomes

  2007influential reference
• Comparative Genomics of Cereals

  2007cited by this paper
• Wheat arabinoxylans : Exploiting variation in amount and composition to develop enhanced varieties

  2007cited by this paper
• Physical and Genetic Structure of the Maize Genome Reflects Its Complex Evolutionary History

  2007cited by this paper
• Combining Bioinformatics and Phylogenetics to Identify Large Sets of Single-Copy Orthologous Genes (COSII) for Comparative, Evolutionary and Systematic Studies: A Test Case in the Euasterid Plant Clade

  2006cited by this paper
• Single-copy genes define a conserved order between rice and wheat for understanding differences caused by duplication, deletion, and transposition of genes

  2006influential reference
• A Comparative Genomics Strategy for Targeted Discovery of Single-Nucleotide Polymorphisms and Conserved-Noncoding Sequences in Orphan Crops1[W]

  2006influential reference
• The Pseudo-Response Regulator Ppd-H1 Provides Adaptation to Photoperiod in Barley

  2005cited by this paper
• The Genomes of Oryza sativa: A History of Duplications

  2005influential reference
• SSCP-SNP in pearl millet—a new marker system for comparative genetics

  2005cited by this paper
• Statistical detection of chromosomal homology using shared-gene density alone

  2005cited by this paper
• Targeted mapping of a sugarcane rust resistance gene (Bru1) using bulked segregant analysis and AFLP markers

  2004cited by this paper
• Comparative DNA sequence analysis of mapped wheat ESTs reveals the complexity of genome relationships between rice and wheat

  2004influential reference
• Molecular markers from the transcribed/expressed region of the genome in higher plants

  2004cited by this paper
• New in silico insight into the synteny between rice (Oryza sativa L.) and maize (Zea mays L.) highlights reshuffling and identifies new duplications in the rice genome.

  2004cited by this paper
• A Chromosome Bin Map of 16,000 Expressed Sequence Tag Loci and Distribution of Genes Among the Three Genomes of Polyploid Wheat

  2004cited by this paper
• An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments.

  2004influential reference
• LineUp: statistical detection of chromosomal homology with application to plant comparative genomics.

  2003cited by this paper
• Positional cloning of the wheat vernalization gene VRN1

  2003cited by this paper
• Cross-species sequence comparisons: a review of methods and available resources.

  2003cited by this paper
• Genetic analysis of grain protein-content, grain yield and thousand-kernel weight in bread wheat

  2003cited by this paper
• A large rearrangement involving genes and low-copy DNA interrupts the microcollinearity between rice and barley at the Rph7 locus.

  2003cited by this paper
• Comparative DNA sequence analysis of wheat and rice genomes.

  2003influential reference
• Identification, Analysis, and Utilization of Conserved Ortholog Set Markers for Comparative Genomics in Higher Plants Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010479.

  2002cited by this paper
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  2002cited by this paper
• Positional cloning of rice semidwarfing gene, sd-1: rice "green revolution gene" encodes a mutant enzyme involved in gibberellin synthesis.

  2002cited by this paper
• ‘Green revolution’ genes encode mutant gibberellin response modulators

  1999cited by this paper
• Genetic map locations for orthologous Vp1 genes in wheat and rice

  1999cited by this paper
• Genetic and Environmental Variations in Water-Extractable Arabinoxylans Content and Flour Extract Viscosity

  1999cited by this paper
• A microsatellite map of wheat.

  1998influential reference
• Rapid reorganization of resistance gene homologues in cereal genomes.

  1998cited by this paper
• THE PHYSICAL MAPPING OF MICROSATELLITE MARKERS IN WHEAT

  1998influential reference
• Marker-assisted introgression in backcross breeding programs.

  1996cited by this paper
• Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population.

  1995cited by this paper
• Convergent Domestication of Cereal Crops by Independent Mutations at Corresponding Genetic Loci

  1995cited by this paper
• QTL analysis: further uses of ‘marker regression’

  1995cited by this paper
• QTL analysis: a simple ‘marker-regression’ approach

  1994cited by this paper
• Construction of multilocus genetic linkage maps in humans.

  1987influential reference
• The estimation of map distances from recombination values.

  1943cited by this paper

• Consensus genomic regions associated with multiple abiotic stress tolerance in wheat and implications for wheat breeding

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• Tritordeum: Creating a New Crop Species—The Successful Use of Plant Genetic Resources

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• Meta-QTLs, ortho-MQTLs, and candidate genes for thermotolerance in wheat (Triticum aestivum L.)

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• The Triple Jags of Dietary Fibers in Cereals: How Biotechnology Is Longing for High Fiber Grains

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  2020cites this paper
• Wheat Cell Wall Polysaccharides (Dietary Fibre)

  2020cites this paper
• Development of wheat—Hordeum chilense Chromosome 2Hch Introgression Lines Potentially Useful for Improving Grain Quality Traits

  2019influential citation
• Identification of a major QTL and associated marker for high arabinoxylan fibre in white wheat flour

  2019cites this paper
• Uncovering homeologous relationships between tetraploid Agropyron cristatum and bread wheat genomes using COS markers

  2019cites this paper
• Genetic diversity in common wheat lines revealed by fluorescence in situ hybridization

  2019cites this paper
• Introgression of a Novel Ug99-Effective Stem Rust Resistance Gene into Wheat and Development of Dasypyrum villosum Chromosome-Specific Markers via Genotyping-by-Sequencing (GBS).

  2019cites this paper
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  2018cites this paper
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  2017cites this paper
• Chromosomal location of genes for resistance to powdery mildew in Agropyron cristatum and mapping of conserved orthologous set molecular markers

  2017cites this paper
• Agronomic Traits and Molecular Marker Identification of Wheat–Aegilops caudata Addition Lines

  2017cites this paper
• Characterization of a set of common wheat–Hordeum chilense chromosome 7Hch introgression lines and its potential use in research on grain quality traits

  2017cites this paper
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  2017cites this paper
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  2017cites this paper
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  2016cites this paper
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• QTL mapping of grain arabinoxylan contents in common wheat using a recombinant inbred line population

  2016influential citation
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  2016cites this paper
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• Brachypodium Paleogenomics: From Genome Evolution to Translational Research in Grass Crops

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  2015cites this paper
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  2014cites this paper
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  2014cites this paper
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  2012cites this paper
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  2012cites this paper
• Sequence-based marker development in wheat: advances and applications to breeding.

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  2012cites this paper
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  2012cites this paper
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  2011cites this paper
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  2011cites this paper
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  2011cites this paper
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  2011cites this paper
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• Use of a global wheat core collection for association analysis of flour and dough quality traits

  2011cites this paper
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  2011cites this paper
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  2010cites this paper
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  2010influential citation
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  2010cites this paper
• A Genetic Framework for Grain Size and Shape Variation in Wheat[C][W]

  2010cites this paper
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  2010cites this paper
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