Testing the phylogenetic position of a parasitic plant (Cuscuta, Convolvulaceae, asteridae): Bayesian inference and the parametric bootstrap on data drawn from three genomes.

No abstract is available for this paper.

• Publication year

  2004

• Venue

  Systematic Biology

• Publication date

  2004-06-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1080/10635150490445896PMID 15503669
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Evolutionary trees from DNA sequences: A maximum likelihood approach

  2005cited by this paper
• RPB2 gene phylogeny in flowering plants, with particular emphasis on asterids.

  2004cited by this paper
• Functional loss of all ndh genes in an otherwise relatively unaltered plastid genome of the holoparasitic flowering plant Cuscuta reflexa

  2004cited by this paper
• Mitochondrial DNA sequences reveal the photosynthetic relatives of Rafflesia, the world's largest flower.

  2004influential reference
• MOLECULAR STUDIES OF PARASITIC PLANTS USING RIBOSOMAL RNA

  2003cited by this paper
• Phylogeny Estimation and Hypothesis Testing using Maximum Likelihood

  2003influential reference
• MacClade 4: analysis of phy-logeny and character evolution

  2003cited by this paper
• An approximately unbiased test of phylogenetic tree selection.

  2002cited by this paper
• Molecular data place Hydnoraceae with Aristolochiaceae.

  2002cited by this paper
• PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10

  2002cited by this paper
• The root of the angiosperms revisited

  2002influential reference
• Monophyly of the Convolvulaceae and circumscription of their major lineages based on DNA sequences of multiple chloroplast loci.

  2002cited by this paper
• Model Misspeci(cid:142)cation and Probabilistic Tests of Topology: Evidence from Empirical Data Sets

  2002influential reference
• MRBAYES: Bayesian inference of phylogenetic trees

  2001cited by this paper
• MRBAYES : Bayesian inference of phylogeny

  2001cited by this paper
• The Closest Living Relatives of Land Plants

  2001influential reference
• Empirical and hierarchical Bayesian estimation of ancestral states.

  2001influential reference
• Phylogeny of Saxifragales (angiosperms, eudicots): analysis of a rapid, ancient radiation.

  2001influential reference
• Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics

  2001influential reference
• Disintegration of the scrophulariaceae.

  2001cited by this paper
• Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms.

  2000cited by this paper
• Parametric phylogenetics?

  2000cited by this paper
• Discovery of paralogous nuclear gene sequences coding for the second-largest subunit of RNA polymerase II (RPB2) and their phylogenetic utility in gentianales of the asterids.

  2000influential reference
• Actin gene family evolution and the phylogeny of coleoid cephalopods (Mollusca: Cephalopoda).

  2000cited by this paper
• Likelihood-based tests of topologies in phylogenetics.

  2000influential reference
• Markov Chain Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees

  2000cited by this paper
• Toward a Phylogenetic Classification of the Lauraceae: Evidence from matK Sequences

  2000cited by this paper
• TESTS OF PLEISTOCENE SPECIATION IN MONTANE GRASSHOPPERS (GENUS MELANOPLUS) FROM THE SKY ISLANDS OF WESTERN NORTH AMERICA

  2000cited by this paper
• What Is the Relationship among Hernandiaceae, Lauraceae, and Monimiaceae, and Why Is This Question So Difficult to Answer?

  2000cited by this paper
• Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

  1999influential reference
• The evolution of parasitism in Scrophulariaceae/Orobanchaceae: plastid gene sequences refute an evolutionary transition series.

  1999influential reference
• Usefulness of RNA polymerase II coding sequences for estimation of green plant phylogeny.

  1998influential reference
• Parallel and convergent evolution in the Convolvulaceae, pp. 201-234

  1998cited by this paper
• The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic and nonphotosynthetic parasitic plants.

  1998cited by this paper
• Molecular Phylogenetic and Evolutionary Studies of Parasitic Plants

  1998influential reference
• An ordinal classification for the families of flowering plants

  1998cited by this paper
• Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atp A sequences.

  1998cited by this paper
• Biogeography of Sulawesian shrews: testing for their origin with a parametric bootstrap on molecular data.

  1998cited by this paper
• MODELTEST: testing the model of DNA substitution

  1998cited by this paper
• Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: many losses of photosynthesis and complex patterns of rate variation.

  1997cited by this paper
• Diversity and classification of flowering plants

  1997cited by this paper
• PSeq-Gen: an application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees

  1997influential reference
• Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

  1997cited by this paper
• Angiosperm Phylogeny Inferred from 18S Ribosomal DNA Sequences

  1997cited by this paper
• Characterization of Mitochondrial Small-Subunit Ribosomal RNAs from Holoparasitic Plants

  1997influential reference
• Molecular zoology: Advances, strategies, and protocols

  1997influential reference
• Alternate paths of evolution for the photosynthetic gene rbcL in four nonphotosynthetic species of Orobanche

  1997cited by this paper
• Inferring complex phytogenies

  1996cited by this paper
• Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference

  1996influential reference
• Inferring complex phylogenies.

  1996cited by this paper
• Structural and functional analysis of plastid genomes from parasitic plants: loss of an intron within the genus Cuscuta

  1995cited by this paper
• INFERRING PHYLOGENIES FROM mtDNA VARIATION: MITOCHONDRIAL‐GENE TREES VERSUS NUCLEAR‐GENE TREES

  1995cited by this paper
• Performance of Phylogenetic Methods in Simulation

  1995cited by this paper
• The Utility of atpB Gene Sequences in Resolving Phylogenetic Relationships: Comparison with rbcL and 18S Ribosomal DNA Sequences in the Lardizabalaceae

  1995cited by this paper
• Convolvulaceae

  1995cited by this paper
• The cDNA sequence of cytochrome b5 associated with cytokinin-induced haustoria formation in Cuscuta reflexa.

  1994cited by this paper
• High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants

  1994influential reference
• Biology and control of Cuscuta.

  1994cited by this paper
• Estimating the pattern of nucleotide substitution

  1994cited by this paper
• A large deletion in the plastid DNA of the holoparasitic flowering plant Cuscuta reflexa concerning two ribosomal proteins (rpl2, rpl23), one transfer RNA (trnI) and an ORF 2280 homologue

  1993cited by this paper
• Phylogenetics of seed plants : An analysis of nucleotide sequences from the plastid gene rbcL

  1993cited by this paper
• SUCCESS OF PHYLOGENETIC METHODS IN THE FOUR-TAXON CASE

  1993cited by this paper
• An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis

  1993cited by this paper
• MUST, a computer package of Management Utilities for Sequences and Trees.

  1993cited by this paper
• Macclade: Analysis of Phylogeny and Character Evolution/Version 3

  1992cited by this paper
• Monophyly of the Asteridae and Identification of Their Major Lineages Inferred From DNA Sequences of rbcL

  1992influential reference
• A Chloroplast DNA Phylogeny of the Solanaceae: Subfamilial Relationships and Character Evolution

  1992cited by this paper
• Organization and sequence of photosynthetic genes from the plastid genome of the holoparasitic flowering plant Cuscuta reflexa

  1992cited by this paper
• The discovery and importance of multiple islands of most

  1991cited by this paper
• Universal primers for amplification of three non-coding regions of chloroplast DNA

  1991influential reference
• A structural, functional and molecular analysis of plastids of the holoparasites Cuscuta reflexa and Cuscuta europaea

  1990cited by this paper
• Dodder (Cuscuta spp.) Control with Dinitroaniline Herbicides in Alfalfa (Medicago sativa)

  1990cited by this paper
• A Theoretical Study of the Underestimation of Branch Lengths by the Maximum Parsimony Principle

  1989cited by this paper
• The structure and development of the haustorium in Cuscuta australis

  1989cited by this paper
• A Framework for the Quantitative Study of Evolutionary Trees

  1989cited by this paper
• The Plant Book

  1988cited by this paper
• Phylogenies from molecular sequences: inference and reliability.

  1988cited by this paper
• The haustorium of Cuscuta - new structural results.

  1987cited by this paper
• A. Engler's Syllabus der Pflanzenfamilien

  1985cited by this paper
• CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP

  1985cited by this paper
• Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues

  1985influential reference
• A rapid DNA isolation procedure for small quantities of fresh leaf tissue

  1980influential reference
• Cases in which Parsimony or Compatibility Methods will be Positively Misleading

  1978cited by this paper
• The American Erycibeae (Convolvulaceae): Maripa, Dicranostyles, and Lysiostyles I. Systematics

  1973influential reference
• Information Theory and an Extension of the Maximum Likelihood Principle

  1973influential reference
• The Biology of Parasitic Flowering Plants

  1969cited by this paper
• The evolution and classification of flowering plants

  1968cited by this paper
• The genus Cuscuta

  1932cited by this paper
• Systematic arrangement of the species of the genus Cuscuta, with critical remarks on old species and desriptions of new ones.

  year unknowncited by this paper

• Elucidating the evolutionary dynamics of parasitism in Cuscuta: in-depth phylogenetic reconstruction and extensive plastomes reduction

  2025cites this paper
• Photosynthetic activity in the heterotrophic plant genus Cuscuta (Convolvulaceae) is modulated by phylogeny and ontogeny.

  2025cites this paper
• Palynological studies of some species of the genus Cuscuta with emphasis on taxonomy

  2024cites this paper
• Potential Plant-To-Plant Transmission: Shared Endophytic Bacterial Community Between Ziziphus lotus and Its Parasite Cuscuta epithymum

  2024cites this paper
• Cuscuta campestris Yunck.: An emerging threat to the indigenous flora of Assam, India

  2024cites this paper
• Morphological characteristics of seeds of four species of the genus Cuscuta (Cuscutaceae) of the Amur Region

  2024cites this paper
• Molecular systematics of Cuscuta subgenus Monogynella (Convolvulaceae) based on plastid and nuclear sequences

  2024cites this paper
• Variation in Chloroplast Genome Size: Biological Phenomena and Technological Artifacts

  2023influential citation
• Inflorescences of Cuscuta (Convolvulaceae): Diversity, evolution and relationships with breeding systems and fruit dehiscence modes

  2023cites this paper
• Unprecedented organelle genomic variations in morning glories reveal independent evolutionary scenarios of parasitic plants and the diversification of plant mitochondrial complexes

  2022cites this paper
• Cuscuta campestris (field dodder).

  2022cites this paper
• Plastid phylogenomics and plastome evolution in the morning glory family (Convolvulaceae)

  2022cites this paper
• Cuscuta monogyna (eastern dodder)

  2022cites this paper
• A Bird’s Eye View of the Systematics of Convolvulaceae: Novel Insights From Nuclear Genomic Data

  2022cites this paper
• Mitochondrial Phylogenomics of Cuscuta (Convolvulaceae) Reveals a Potentially Functional Horizontal Gene Transfer from the Host

  2022cites this paper
• The Evolution of Cytogenetic Traits in Cuscuta (Convolvulaceae), the Genus With the Most Diverse Chromosomes in Angiosperms

  2022cites this paper
• Illuminating the lineage-specific diversification of resin glycoside acylsugars in the morning glory (Convolvulaceae) family using computational metabolomics

  2022cites this paper
• Genetic relationships and diversity within cultivated accessions of Salvia officinalis L. in Turkey

  2021cites this paper
• Disentangling Cuscuta identification in Brazil: a first taxonomic contribution to the northeast region species

  2021cites this paper
• New molecular phylogenetic evidence for Indian endemic species of the tribe Merremieae, Convolvulaceae

  2021cites this paper
• Computational metabolomics illuminates the lineage-specific diversification of resin glycoside acylsugars in the morning glory (Convolvulaceae) family

  2021cites this paper
• Molecular Systematics of Tribe Physarieae (Brassicaceae) Based on Nuclear ITS, LUMINIDEPENDENS, and Chloroplast ndhF

  2021cites this paper
• Cuscuta seeds: Diversity and evolution, value for systematics/identification and exploration of allometric relationships

  2020cites this paper
• COMPARATIVE INVESTIGATION OF PALYNOLOGICAL CHARACTERS OF CUSCUTA REFLEXA AND FEW MEMEBERS OF CONVOLVULACEAE

  2020influential citation
• Isolation and Identification of Pure Bioactive Compounds from Cuscuta reflexa Grown on Nerium oleander Host Plant by Flash Column Chromatography and GC-MS/MS Analysis

  2020cites this paper
• Reconstructing plastome evolution across the phylogenetic backbone of the parasitic plant genus Cuscuta (Convolvulaceae)

  2020cites this paper
• Molecular phylogeny based on its sequences of nrDNA of some species belonging to dodder (Cuscuta L.) genus from various ecological sites of Turkey

  2020cites this paper
• Intense proliferation of rDNA sites and heterochromatic bands in two distantly related Cuscuta species (Convolvulaceae) with very large genomes and symmetric karyotypes

  2020cites this paper
• Parasitic angiosperms: How often and how many?

  2020cites this paper
• Diversity and Evolution of Seeds in Cuscuta (dodders, Convolvulaceae): Morphology and structure

  2019influential citation
• APPROACH TO THE CURRENT STATE OF KNOWLEDGE ON DODDERS (CUSCUTA L. CONVOLVULACEAE) FROM A TAXONOMIC, MORPHOLOGICAL AND PHYSIOLOGICAL POINT OF VIEW

  2019cites this paper
• Diversity and Classification of Flowering Plants: Eudicots

  2019cites this paper
• のびる、つかまる、つながる －つる植物の多様な生態と多様な研究－

  2019cites this paper
• Cladogenesis and reticulation in Cuscuta sect. Denticulatae (Convolvulaceae)

  2018cites this paper
• Sesamin from Cuscuta palaestina natural plant extracts: Directions for new prospective applications

  2018cites this paper
• Diversity, evolution and taxonomic significance of fruit in Cuscuta (dodder, Convolvulaceae); the evolutionary advantages of indehiscence

  2018cites this paper
• Pharmacotherapy of Cancer from the Perspective of Traditional Persian Medicine

  2017cites this paper
• Diversity and evolution of fruits in Cuscuta (dodders; Convolvulaceae)

  2017influential citation
• Degeneration of photosynthetic capacity in mixotrophic plants, Chimaphila japonica and Pyrola decorata (Ericaceae)

  2017cites this paper
• Herbal Insecticides, Repellents and Biomedicines: Effectiveness and Commercialization

  2016cites this paper
• Prospects for Development of Biomedicines from the Medicinal Plants of Northeastern India

  2016cites this paper
• A Phylogenetically Based Infrageneric Classification of the Parasitic Plant Genus Cuscuta (Dodders, Convolvulaceae)

  2015cites this paper
• Investigating plastid genome evolution in heterotrophic plants and the use of structural changes to the plastid genome as phylogenetic markers

  2015cites this paper
• Pollen morphology and taxonomic implications in Jacquemontia Choisy (Convolvulaceae)

  2015cites this paper
• Resolving the unresolved tribe: a molecular phylogenetic framework for the Merremieae (Convolvulaceae)

  2015cites this paper
• Morfologia polínica de espécies das tribos Ipomoeeae Hallier f. e Merremieae D.F. Austin (Convolvulaceae) ocorrentes numa região de ecótono do município de Caetité, BA, Brasil

  2015cites this paper
• Diversity and Evolution of the Multicellular Protuberances in Cuscuta (Convolvulaceae) and the Function of the Stomatiferous Protuberances in Cuscuta subgenus Grammica

  2014influential citation
• Phylogeny, character evolution, and biogeography of Cuscuta (dodders; Convolvulaceae) inferred from coding plastid and nuclear sequences.

  2014cites this paper
• Diversity, evolution, and function of stomata bearing structures in Cuscuta (dodders, Convolvulaceae): From extrafloral nectar secretion to transpiration in arid conditions

  2014cites this paper
• P HYLOGENY OF LAMIIDAE 1

  2014cites this paper
• BIOLOGICAL CHARACTERISTICS OF SOME PARASITIC FLOWERING PLANTS

  2014cites this paper
• Phylogeny of Lamiidae.

  2014cites this paper
• Parasitic plants have increased rates of molecular evolution across all three genomes

  2013cites this paper
• To attract or to repel? Diversity, evolution and role of the “most peculiar organ” in the Cuscuta flower (dodder, Convolvulaceae)—the infrastaminal scales

  2013cites this paper
• Morphology, Structure, Function and Evolution of Infrastaminal Scales in Cuscuta (Convolvulaceae)

  2013influential citation
• Plastid genome evolution across the genus Cuscuta (Convolvulaceae): two clades within subgenus Grammica exhibit extensive gene loss

  2013cites this paper
• Pollination and mating systems of Apodanthaceae and the distribution of reproductive traits in parasitic angiosperms.

  2013cites this paper
• Plastid genome evolution in mycoheterotrophic Ericaceae

  2012cites this paper
• Diversity and evolution of pollen-ovule production in Cuscuta (dodders, Convolvulaceae) in relation to floral morphology

  2012influential citation
• Diversity and evolution of the gynoecium in Cuscuta (dodders, Convolvulaceae) in relation to their reproductive biology: two styles are better than one

  2011influential citation
• Old-New World and trans-African disjunctions of Thamnosma (Rutaceae): intercontinental long-distance dispersal and local differentiation in the succulent biome.

  2011cites this paper
• Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes

  2010cites this paper
• Pollen evolution and its taxonomic significance in Cuscuta (dodders, Convolvulaceae)

  2010influential citation
• Evidence for a vicariant origin of Macaronesian-Eritreo/Arabian disjunctions in Campylanthus Roth (Plantaginaceae).

  2010cites this paper
• Replication of Grapevine leafroll-associated virus-7 (GLRaV-7) by Cuscuta Species and Its Transmission to Herbaceous Plants.

  2010cites this paper
• Parasites, their relationships and the disintegration of scrophulariaceae sensu lato

  2010cites this paper
• Evolution and Systematic Significance of Reproductive Structures in the Genus Cuscuta (dodders, Convolvulaceae): Pollen and Gynoecium

  2009cites this paper
• Parallel Loss of Plastid Introns and Their Maturase in the Genus Cuscuta

  2009cites this paper
• Classification of Convolvulaceae: A Phylogenetic Approach

  2009cites this paper
• Physical dormancy in seeds of the holoparasitic angiosperm Cuscuta australis (Convolvulaceae, Cuscuteae): dormancy-breaking requirements, anatomy of the water gap and sensitivity cycling.

  2008cites this paper
• Diversity Arrays Technology (DArT) for Pan-Genomic Evolutionary Studies of Non-Model Organisms

  2008cites this paper
• Delimitation of major lineages within Cuscuta subgenus Grammica (Convolvulaceae) using plastid and nuclear DNA sequences.

  2007cites this paper
• Glucuronidase activity in seedlings of the parasitic angiosperm Cusctua pentagona : developmental impact of the-glucuronidase inhibitor saccharic acid 1 , 4-lactone

  2007cites this paper
• Duplication and paralog sorting of RPB2 and RPB1 genes in core eudicots.

  2007cites this paper
• Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta

  2007cites this paper
• Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta (Convolvulaceae)

  2007cites this paper
• Phylogeny Of Cuscuta Subgenus Cuscuta (convolvulaceae) Based On Nrdna Its And Chloroplast Trnl Intron Sequences

  2007cites this paper
• GRAMMICA (CONVOLVULACEAE) USING PLASTID AND NUCLEAR DNA SEQUENCES 1

  2007cites this paper
• Seed morphology of some species of Convolvulaceae from Egypt (Identification of species and systematic significance)

  2007cites this paper
• Mitochondrial Data in Monocot Phylologenetics

  2006cites this paper
• Review of the systematics of Scrophulariaceae s.l. and their current disposition

  2006cites this paper
• Molecular evidence for the age, origin, and evolutionary history of the American desert plant genus Tiquilia (Boraginaceae).

  2006cites this paper
• The biology of Canadian weeds. 133. Cuscuta campestris Yuncker, C. gronovii Willd. ex Schult., C. umbrosa Beyr. ex Hook., C. epithymum (L.) L. and C. epilinum Weihe.

  2006cites this paper
• Molecular systematics of Tiquilia (Boraginaceae): age, origin, dispersal history, and gypsophilic evolution

  2005cites this paper
• Down the Slippery Slope: Plastid Genome Evolution in Convolvulaceae

  2005cites this paper
• Filogenia molecular, taxas evolutivas, tempo de divergência e herança organelar em Passiflora L. (Passifloraceae)

  2005cites this paper
• Gene Discovery for Comparative Biology of Parasitic and Non-parasitic Plants. a Five-week Molecular Research Immersion

  year unknowncites this paper
• Aliso: A Journal of Systematic and Floristic Botany Aliso: A Journal of Systematic and Floristic Botany

  year unknowncites this paper