A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code

No abstract is available for this paper.

• Publication year

  2016

• Venue

  IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum

• Publication date

  2016-05-01

• Fields of study

  Computer Science

• Identifiers
  DOI 10.1109/IPDPSW.2016.59
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Parallel Read Error Correction for Big Genomic Datasets

  2015influential reference
• The Impact of High-Performance Computing Best Practice Applied to Next-Generation Sequencing Workflows

  2015cited by this paper
• HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data

  2014cited by this paper
• Fiona: a parallel and automatic strategy for read error correction

  2014cited by this paper
• Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly

  2014cited by this paper
• Improving transcriptome assembly through error correction of high-throughput sequence reads

  2013cited by this paper
• A survey of error-correction methods for next-generation sequencing

  2013influential reference
• RACER: Rapid and accurate correction of errors in reads

  2013cited by this paper
• A Parallel Algorithm for Spectrum-based Short Read Error Correction

  2012cited by this paper
• The IBM Blue Gene/Q Compute Chip

  2012cited by this paper
• which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Ray Meta: scalable de novo metagenome assembly and profiling

  2012cited by this paper
• ECHO: a reference-free short-read error correction algorithm.

  2011cited by this paper
• DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

  2011cited by this paper
• Reptile: representative tiling for short read error correction

  2010cited by this paper
• Quake: quality-aware detection and correction of sequencing errors

  2010cited by this paper
• SHREC: a short-read error correction method

  2009cited by this paper
• Next-generation sequencing transforms today's biology

  2008cited by this paper

• SPECTR: Scalable Parallel Short Read Error Correction on Multi-core and Many-core Architectures

  2018cites this paper