Gene Expression Profiles Deciphering Leaf Senescence Variation between Early- and Late-Senescence Cotton Lines

Leaf senescence varies greatly among genotypes of cotton (Gossypium hirsutium L), possibly due to the different expression of senescence-related genes. To determine genes involved in leaf senescence, we performed genome-wide transcriptional profiling of the main-stem leaves of an early- (K1) and a late-senescence (K2) cotton line at 110 day after planting (DAP) using the Solexa technology. The profiling analysis indicated that 1132 genes were up-regulated and 455 genes down-regulated in K1 compared with K2 at 110 DAP. The Solexa data were highly consistent with, and thus were validated by those from real-time quantitative PCR (RT-PCR). Most of the genes related to photosynthesis, anabolism of carbohydrates and other biomolecules were down-regulated, but those for catabolism of proteins, nucleic acids, lipids and nutrient recycling were mostly up-regulated in K1 compared with K2. Fifty-one differently expressed hormone-related genes were identified, of which 5 ethylene, 3 brassinosteroid (BR), 5 JA, 18 auxin, 8 GA and 1 ABA related genes were up-regulated in K1 compared with K2, indicating that these hormone-related genes might play crucial roles in early senescence of K1 leaves. Many differently expressed transcription factor (TF) genes were identified and 11 NAC and 8 WRKY TF genes were up-regulated in K1 compared with K2, suggesting that TF genes, especially NAC and WRKY genes were involved in early senescence of K1 leaves. Genotypic variation in leaf senescence was attributed to differently expressed genes, particularly hormone-related and TF genes.

• Publication year

  2013

• Venue

  PLoS ONE

• Publication date

  2013-07-29

• Fields of study

  Agricultural and Food Sciences, Medicine, Biology

• Identifiers
  DOI 10.1371/journal.pone.0069847PMID 23922821PMCID 3726770
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• JUNGBRUNNEN1, a Reactive Oxygen Species–Responsive NAC Transcription Factor, Regulates Longevity in Arabidopsis[W][OA]

  2012cited by this paper
• Nitrogen rate and plant density effects on yield and late-season leaf senescence of cotton raised on a saline field

  2012cited by this paper
• Epoxycarotenoid cleavage by NCED5 fine-tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members.

  2012cited by this paper
• Trehalose 6-Phosphate Is Required for the Onset of Leaf Senescence Associated with High Carbon Availability1[W][OA]

  2012cited by this paper
• ORS1, an H2O2-Responsive NAC Transcription Factor, Controls Senescence in Arabidopsis thaliana

  2011cited by this paper
• YUCCA6 over-expression demonstrates auxin function in delaying leaf senescence in Arabidopsis thaliana

  2011cited by this paper
• High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation[C][W][OA]

  2011cited by this paper
• Stem girdling influences concentrations of endogenous cytokinins and abscisic acid in relation to leaf senescence in cotton

  2011cited by this paper
• The Arabidopsis NAC Transcription Factor VNI2 Integrates Abscisic Acid Signals into Leaf Senescence via the COR/RD Genes[W]

  2011influential reference
• Senescence-inducible expression of isopentenyl transferase extends leaf life, increases drought stress resistance and alters cytokinin metabolism in cassava.

  2010cited by this paper
• agriGO: a GO analysis toolkit for the agricultural community

  2010cited by this paper
• Transcriptome profile analysis of floral sex determination in cucumber.

  2010cited by this paper
• A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence.

  2010cited by this paper
• Auxin response factor 2 (ARF2) plays a major role in regulating auxin-mediated leaf longevity

  2010cited by this paper
• knowledge-based potentials and structural filters Coarse-grained modeling of large RNA molecules with Material Supplemental

  2009cited by this paper
• Effects of early-fruit removal on endogenous cytokinins and abscisic acid in relation to leaf senescence in cotton

  2009cited by this paper
• Effects of cotton rootstock on endogenous cytokinins and abscisic acid in xylem sap and leaves in relation to leaf senescence.

  2008cited by this paper
• Transcription factors regulating leaf senescence in Arabidopsis thaliana.

  2008cited by this paper
• Mapping and quantifying mammalian transcriptomes by RNA-Seq

  2008cited by this paper
• Mapping short DNA sequencing reads and calling variants using mapping quality scores.

  2008cited by this paper
• Regulation of leaf senescence by NTL9-mediated osmotic stress signaling in Arabidopsis.

  2008cited by this paper
• An approach to transcriptome analysis of non-model organisms using short-read sequences.

  2008cited by this paper
• Leaf senescence.

  2007cited by this paper
• Delayed leaf senescence induces extreme drought tolerance in a flowering plant

  2007cited by this paper
• Transcriptome analysis of senescence in the flag leaf of wheat (Triticum aestivum L.).

  2007cited by this paper
• Yield, quality and leaf senescence of cotton grown at varying planting dates and plant densities in the Yellow River Valley of China

  2006cited by this paper
• AtNAP, a NAC family transcription factor, has an important role in leaf senescence.

  2006cited by this paper
• Transcription Analysis of Arabidopsis Membrane Transporters and Hormone Pathways during Developmental and Induced Leaf Senescence1[W]

  2006influential reference
• Cloning and characterization of two 9-cis-epoxycarotenoid dioxygenase genes, differentially regulated during fruit maturation and under stress conditions, from orange (Citrus sinensis L. Osbeck).

  2006cited by this paper
• The role of sugars in integrating environmental signals during the regulation of leaf senescence.

  2006cited by this paper
• Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.

  2005cited by this paper
• AtATG18a is required for the formation of autophagosomes during nutrient stress and senescence in Arabidopsis thaliana.

  2005cited by this paper
• NAC transcription factors: structurally distinct, functionally diverse.

  2005cited by this paper
• Autophagic Nutrient Recycling in Arabidopsis Directed by the ATG8 and ATG12 Conjugation Pathways1

  2005cited by this paper
• AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana

  2005cited by this paper
• Accumulation and remobilization of amino acids during senescence of detached and attached leaves: in planta analysis of tryptophan levels by recombinant luminescent bacteria.

  2005cited by this paper
• Cross Talk between Gibberellin and Cytokinin: The Arabidopsis GA Response Inhibitor SPINDLY Plays a Positive Role in Cytokinin Signaling

  2005cited by this paper
• Endogenous hormones and expression of senescence-related genes in different senescent types of maize.

  2005cited by this paper
• AUXIN RESPONSE FACTOR 2 (ARF2): a pleiotropic developmental regulator.

  2005cited by this paper
• The molecular and genetic control of leaf senescence and longevity in Arabidopsis.

  2005cited by this paper
• Processing of ATG8s, Ubiquitin-Like Proteins, and Their Deconjugation by ATG4s Are Essential for Plant Autophagy

  2004cited by this paper
• A transcriptional timetable of autumn senescence

  2004cited by this paper
• Molecular events in senescing Arabidopsis leaves.

  2004cited by this paper
• Transcriptome of Arabidopsis leaf senescence

  2004cited by this paper
• Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family.

  2003cited by this paper
• Large-scale identification of leaf senescence-associated genes.

  2003cited by this paper
• The Arabidopsis Mutant alh1 Illustrates a Cross Talk between Ethylene and Auxin1

  2003cited by this paper
• Overproduction of Cytokinins in Petunia Flowers Transformed with PSAG12-IPT Delays Corolla Senescence and Decreases Sensitivity to Ethylene1

  2003cited by this paper
• Nitrogen metabolism and remobilization during senescence.

  2002cited by this paper
• Evidence Supporting a Role of Jasmonic Acid in Arabidopsis Leaf Senescence1

  2002cited by this paper
• The APG8/12-activating Enzyme APG7 Is Required for Proper Nutrient Recycling and Senescence in Arabidopsis thaliana *

  2002cited by this paper
• The molecular analysis of leaf senescence--a genomics approach.

  2002cited by this paper
• Changes of Photosynthetic Characteristics in Relation to Leaf Senescence in Two Maize Hybrids with Different Senescent Appearance

  2002cited by this paper
• Leaf Senescence and Starvation-Induced Chlorosis Are Accelerated by the Disruption of an Arabidopsis Autophagy Gene1

  2002cited by this paper
• Effects of P(SAG12)-IPT gene expression on development and senescence in transgenic lettuce.

  2001cited by this paper
• Nutrients mobilized from leaves of Arabidopsis thaliana during leaf senescence

  2001cited by this paper
• THE CONTROL OF THE FALSE DISCOVERY RATE IN MULTIPLE TESTING UNDER DEPENDENCY

  2001cited by this paper
• Networking senescence-regulating pathways by using Arabidopsis enhancer trap lines.

  2001cited by this paper
• Auxin-induced ethylene triggers abscisic acid biosynthesis and growth inhibition.

  2000cited by this paper
• Five ways to stay green.

  2000cited by this paper
• Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.

  2000cited by this paper
• Salicylic acid has a role in regulating gene expression during leaf senescence.

  2000cited by this paper
• Premature senescence of cotton (Gossypium hirsutum L.) – Predominantly a potassium disorder caused by an imbalance of source and sink

  1999cited by this paper
• Diverse range of gene activity during Arabidopsis thaliana leaf senescence includes pathogen-independent induction of defense-related genes

  1999cited by this paper
• Identification of a promoter region responsible for the senescence-specific expression of SAG12

  1999cited by this paper
• BRASSINOSTEROIDS: Essential Regulators of Plant Growth and Development.

  1998cited by this paper
• A comparison of the expression patterns of several senescence-associated genes in response to stress and hormone treatment

  1998influential reference
• The significance of digital gene expression profiles.

  1997cited by this paper
• Activation of the ethylene gas response pathway in Arabidopsis by the nuclear protein ETHYLENE-INSENSITIVE3 and related proteins.

  1997cited by this paper
• A senescence-associated gene of Arabidopsis thaliana is distinctively regulated during natural and artificially induced leaf senescence

  1996cited by this paper
• Ethylene regulates the timing of leaf senescence in Arabidopsis

  1995cited by this paper
• Inhibition of Leaf Senescence by Autoregulated Production of Cytokinin

  1995cited by this paper
• Leaf development in Lolium temulentum L.: photosynthesis in relation to growth and senescence

  1995cited by this paper
• Delayed Leaf Senescence in Tobacco Plants Transformed with tmr, a Gene for Cytokinin Production in Agrobacterium.

  1991cited by this paper
• Correlation of xylem sap cytokinin levels with monocarpic senescence in soybean.

  1990cited by this paper
• Metabolism and physiology of abscisic acid

  1988cited by this paper
• Insensitivity to Ethylene Conferred by a Dominant Mutation in Arabidopsis thaliana

  1988cited by this paper
• Abscisic Acid and cutout in cotton.

  1985cited by this paper
• Changes in the abscisic acid content of oat leaves during senescence.

  1980cited by this paper
• Relationship between Auxin and Membrane-Integrity in Tissue Senescence and Abscission.

  1957cited by this paper
• AUXIN IN RELATION TO LEAF BLADE ABSCISSION.

  1951cited by this paper

• Functional regulation by ethylene throughout the cotton life cycle.

  2025cites this paper
• Roles of NAC transcription factors in cotton

  2024cites this paper
• Physiological and molecular characteristics associated with the anti-senescence in Camellia oleifera Abel.

  2024influential citation
• Morphological and Physiological Mechanisms of Melatonin on Delaying Drought-Induced Leaf Senescence in Cotton

  2023cites this paper
• Abscisic acid can augment, but is not essential for autumnal leaf senescence.

  2023cites this paper
• Comprehensive transcriptomic analysis of age-, dark-, and salt-induced senescence reveals underlying mechanisms and key regulators of leaf senescence in Zoysia japonica

  2023cites this paper
• Plastic film mulching does not increase the seedcotton yield due to the accelerated late-season leaf senescence of short-season cotton compared with non-mulching

  2022cites this paper
• The Role of Nitric Oxide in Plant Responses to Salt Stress

  2022cites this paper
• Variability and limits of nitrogen and phosphorus resorption during foliar senescence

  2022cites this paper
• Transcriptome analysis of mulberry (Morus alba L.) leaves to identify differentially expressed genes associated with post-harvest shelf-life elongation

  2022cites this paper
• Transcriptome analysis reveals the genes involved in S-alk(en)ylcysteine sulfoxide biosynthesis and its biosynthetic location in postharvest chive (Allium schoenoprasum L.).

  2022cites this paper
• Physiological and Comparative Transcriptomic Analysis Provide Insight Into Cotton (Gossypium hirsutum L.) Root Senescence in Response

  2021cites this paper
• Comparative Transcriptome Analysis of Salt Stress-Induced Leaf Senescence in Medicago truncatula

  2021cites this paper
• Integrative Analyses of Biochemical Properties and Transcriptome Reveal the Dynamic Changes in Leaf Senescence of Tobacco (Nicotiana tabacum L.)

  2021cites this paper
• Genome-wide identification and expression analysis of NAC transcription factors in Ziziphus jujuba Mill. reveal their putative regulatory effects on tissue senescence and abiotic stress responses

  2021cites this paper
• H3K4me2, H4K5ac and DNA Methylation Function in Short- and Long-term Heat Stress Responses Through Affecting the Expression of the Stress-related Genes in G. hirsutum

  2021cites this paper
• Study on the Anti-Aging Physiological Characteristics and Molecular Mechanism of Camellia Oleifera

  2021cites this paper
• Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age

  2020cites this paper
• Red versus green leaves: transcriptomic comparison of foliar senescence between two Prunus cerasifera genotypes

  2020cites this paper
• Corrigendum: ATBS1-INTERACTING FACTOR 2 negatively regulates dark- and brassinosteroid-induced leaf senescence through interactions with INDUCER OF CBF EXPRESSION 1

  2020cites this paper
• iTRAQ-based quantitative proteomic analysis of cotton (Gossypium hirsutum L.) leaves reveals pathways associated throughout the aging process

  2019cites this paper
• Transcriptome, transcription factors and transcriptional regulation of leaf senescence

  2019cites this paper
• Role of the circadian clock in fine-tuning the process of leaf senescence in plants

  2019cites this paper
• Senescence-induced expression of ZmSUT1 in cotton delays leaf senescence while the seed coat-specific expression increases yield

  2019cites this paper
• ATBS1-INTERACTING FACTOR 2 negatively regulates dark- and brassinosteroid-induced leaf senescence through interactions with INDUCER OF CBF EXPRESSION 1

  2019cites this paper
• Arabidopsis WRKY53, a Node of Multi-Layer Regulation in the Network of Senescence

  2019cites this paper
• Removal of early fruit branches as potential regulator of Cry1Ac, antioxidants, senescence and yield in Bt. cotton

  2018cites this paper
• Biomass and Phosphorus Accumulation , Partitioning and Remobilization during Grain Development in Wheat under Phosphorus Deficiency

  2018cites this paper
• Removal of early fruiting branches impacts leaf senescence and yield by altering the sink/source ratio of field-grown cotton

  2018cites this paper
• Improve Nitrogen use efficiency of wheat cultivars under Western Australian conditions

  2018cites this paper
• Molecular characterization of a stress-induced NAC gene, GhSNAC3, from Gossypium hirsutum

  2018cites this paper
• Transcriptome Analysis of Gene Expression Patterns Potentially Associated with Premature Senescence in Nicotiana tabacum L.

  2018cites this paper
• Phosphorus remobilisation during grain filling in rice.

  2017cites this paper
• Global transcriptome analysis of the maize (Zea mays L.) inbred line 08LF during leaf senescence initiated by pollination-prevention

  2017cites this paper
• Remobilisation of phosphorus fractions in rice flag leaves during grain filling: Implications for photosynthesis and grain yields

  2017cites this paper
• GhNAC18, a novel cotton (Gossypium hirsutum L.) NAC gene, is involved in leaf senescence and diverse stress responses

  2016cites this paper
• Integrating transcriptomic and metabolomic analysis to understand natural leaf senescence in sunflower.

  2016cites this paper
• GhNAC12, a neutral candidate gene, leads to early aging in cotton (Gossypium hirsutum L).

  2016cites this paper
• Fine Mapping of Shoot Fly Resistance and Stay-Green QTLS on Sorghum Chromosome SBI-10

  2016cites this paper
• Mechanisms and regulation of senescence and maturity performance in cotton

  2016cites this paper
• Phosphorus uptake, partitioning and redistribution during grain filling in rice.

  2016cites this paper
• Identification and characterization of contrasting sunflower genotypes to early leaf senescence process combining molecular and physiological studies (Helianthus annuus L.).

  2016cites this paper
• Phosphorus remobilization from rice flag leaves during grain filling: an RNA‐seq study

  2016cites this paper
• Exogenous nitric oxide delays salt-induced leaf senescence in cotton (Gossypium hirsutum L.)

  2016cites this paper
• Toward Systems Understanding of Leaf Senescence: An Integrated Multi-Omics Perspective on Leaf Senescence Research.

  2016cites this paper
• Physiological and molecular adjustment of cotton to waterlogging at peak-flowering in relation to growth and yield

  2015cites this paper
• TaSCL14, a novel wheat (Triticum aestivum L.) GRAS gene, regulates plant growth, photosynthesis, tolerance to photooxidative stress, and senescence.

  2015cites this paper
• A novel NAP member GhNAP is involved in leaf senescence in Gossypium hirsutum

  2015cites this paper
• Phytochemical profile of fresh and senescent leaves due to storage for Ficus deltoidea

  2015cites this paper
• Signaling Pathways in Eukaryotic Stress, Aging, and Senescence: Common and Distinct Pathways

  2015cites this paper
• Biotechnological Approaches to Evolve Sorghum (Sorghum bicolor (L.) Moench) for Drought Stress Tolerance and Shoot fly Resistance

  2015cites this paper
• Bovine serum albumin in saliva mediates grazing response in Leymus chinensis revealed by RNA sequencing

  2014cites this paper