The phylogeny of the subgroups within the melanogaster species group: likelihood tests on COI and COII sequences and a Bayesian estimate of phylogeny.

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Molecular Phylogenetics and Evolution

• Publication date

  2005-10-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/J.YMPEV.2005.02.018PMID 16182148
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Software manual for PAUPRat: A tool to implement Parsimony Ratchet searches using PAUP*

  2006cited by this paper
• Book review: “Bayesian Data Analysis,” Second Edition by A. Gelman, J.B. Carlin, H.S. Stern, and D.B. Rubin Chapman & Hall/CRC, 2004

  2005cited by this paper
• The mitochondrial DNA molecule ofDrosophila yakuba: Nucleotide sequence, gene organization, and genetic code

  2005cited by this paper
• Molecular phylogeny of the subgenus Sophophora of Drosophila derived from large subunit of ribosomal RNA sequences

  2004cited by this paper
• How meaningful are Bayesian support values?

  2004influential reference
• Bayesian phylogenetic analysis of combined data.

  2004cited by this paper
• A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data.

  2004influential reference
• Environmental enrichment improves mating success in fruit flies

  2003cited by this paper
• Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics.

  2003influential reference
• Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity.

  2003cited by this paper
• Accelerated likelihood surface exploration: the likelihood ratchet.

  2003influential reference
• Adaptive evolution drives divergence of a hybrid inviability gene between two species of Drosophila

  2003cited by this paper
• MacClade 4: analysis of phy-logeny and character evolution

  2003cited by this paper
• Fitness effects of female mate choice: preferred males are detrimental for Drosophila melanogaster females

  2003cited by this paper
• Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference

  2002cited by this paper
• Associations between mycophagous Drosophila and their Howardula nematode parasites: a worldwide phylogenetic shuffle

  2002cited by this paper
• Phylogeny of the subgenus sophophora (Diptera: drosophilidae) based on combined analysis of nuclear and mitochondrial sequences.

  2002cited by this paper
• Phylogeny of the Oriental Drosophila melanogaster species group: a multilocus reconstruction.

  2002cited by this paper
• Phylogeny of a paradigm lineage: the Drosophila melanogaster species group (Diptera: Drosophilidae)

  2002cited by this paper
• PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10

  2002cited by this paper
• Molecular Phylogenetics and Evolution

  2001cited by this paper
• I–R system of hybrid dysgenesis in Drosophila melanogaster: analysis of the mitochondrial DNA in reactive strains exhibiting different potentials for I factor transposition

  2001cited by this paper
• MRBAYES: Bayesian inference of phylogenetic trees

  2001influential reference
• Phylogenetic utility of mitochondrial COI and nuclear Gpdh genes in Drosophila.

  2001influential reference
• Phylogenetic relationships and climatic adaptations in the Drosophila takahashii and montium species subgroups.

  2000cited by this paper
• The genome sequence of Drosophila melanogaster.

  2000cited by this paper
• Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

  1999influential reference
• The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

  1999cited by this paper
• Reevaluation of phylogeny in the Drosophila obscura species group based on combined analysis of nucleotide sequences.

  1999cited by this paper
• A MOLECULAR PHYLOGENY OF THE DROSOPHILA WILLISTONI GROUP: CONFLICTS BETWEEN SPECIES CONCEPTS?

  1998cited by this paper
• Phylogeny of the Drosophila saltans species group based on combined analysis of nuclear and mitochondrial DNA sequences.

  1998cited by this paper
• Differences in evolutionary rates among amino acid classes in the mitochondrial genes cytochrome oxidase I and cytochrome oxidase II in Drosophila.

  1998cited by this paper
• MODELTEST: testing the model of DNA substitution

  1998influential reference
• MITOCHONDRIAL DNA PHYLOGENIES FOR THE DROSOPHILA OBSCURA GROUP

  1997cited by this paper
• Molecular evolution of the Amy multigenes in the subgenus Sophophora of Drosophila.

  1997cited by this paper
• CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

  1994influential reference
• Relationships in the Drosophila obscura species group, inferred from mitochondrial cytochrome oxidase II sequences.

  1993cited by this paper
• Molecular phylogeny of Drosophila based on ribosomal RNA sequences

  1993influential reference
• Mitochondrial DNA sequence divergence in the Melanogaster and oriental species subgroups of Drosophila.

  1991cited by this paper
• Evolution of Drosophila mitochondrial DNA and the history of the melanogaster subgroup.

  1990cited by this paper
• A Concern for Evidence and a Phylogenetic Hypothesis of Relationships among Epicrates (Boidae, Serpentes)

  1989cited by this paper
• Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

  1989influential reference
• THE LIMITS OF AMINO ACID SEQUENCE DATA IN ANGIOSPERM PHYLOGENETIC RECONSTRUCTION

  1988cited by this paper
• The melanogaster species group

  1986influential reference
• CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP

  1985cited by this paper
• On the evolutionary relationships of Drosophila melanogaster

  1983influential reference
• Stasipatric speciation in Drosophila.

  1983cited by this paper
• Current status of the Drosophila melanogaster species‐group (Diptera)

  1980cited by this paper
• The Genetics and Biology of Drosophila

  1976cited by this paper

• Direct PCR meets high-throughput sequencing-metabarcoding of aquatic insect communities without DNA purification

  2023cites this paper
• Direct PCR meets high-throughput sequencing – metabarcoding of chironomid communities without DNA extraction

  2023cites this paper
• Universal Mitochondrial Multi-Locus Sequence Analysis (mtMLSA) to Characterise Populations of Unanticipated Plant Pest Biosecurity Detections

  2022cites this paper
• Using Species Groups to Approach the Large and Taxonomically Unresolved Freshwater Fish Family Nemacheilidae (Teleostei: Cypriniformes)

  2022cites this paper
• Ecological Vulnerability Analysis for Suppression of Drosophila suzukii by Gene Drives

  2021cites this paper
• DrosoPhyla: Resources for Drosophilid Phylogeny and Systematics

  2021cites this paper
• Phylogenetic position of the Drosophila fima and dentissima lineages, and the status of the D. melanogaster species group.

  2019cites this paper
• Evolution of DNMT2 in drosophilids: Evidence for positive and purifying selection and insights into new protein (pathways) interactions

  2018cites this paper
• Increase Data Characters to Construct the Molecular Phylogeny of the Drosophila auraria Species Complex

  2017cites this paper
• The Drosophila bipectinata species complex: degree of sterility and dystrophied ovaries in interspecific hybrid females

  2016cites this paper
• A HRM Real-Time PCR Assay for Rapid and Specific Identification of the Emerging Pest Spotted-Wing Drosophila (Drosophila suzukii)

  2014cites this paper
• BuT2 Is a Member of the Third Major Group of hAT Transposons and Is Involved in Horizontal Transfer Events in the Genus Drosophila

  2014cites this paper
• Whole genome phylogenies for multiple Drosophila species

  2012cites this paper
• Molecular characteristics of mitochondrial DNA and phylogenetic analysis of the loach (Misgurnus anguillicaudatus) from the Poyang Lake

  2012cites this paper
• Increasing the data size to accurately reconstruct the phylogenetic relationships between nine subgroups of the Drosophila melanogaster species group (Drosophilidae, Diptera).

  2012cites this paper
• Diptera-Specific Polymerase Chain Reaction Amplification Primers of use in Molecular Phylogenetic Research

  2011influential citation
• Recent trends in molecular phylogenetic analysis: where to next?

  2011cites this paper
• Testing and quantifying phylogenetic signals and homoplasy in morphometric data.

  2010influential citation
• Speciation as an active force in promoting genetic evolution.

  2010cites this paper
• Diversidade e evolução de elementos de transposição em Drosophila

  2010cites this paper
• Recovery of the mitochondrial COI barcode region in diverse Hexapoda through tRNA-based primers

  2010cites this paper
• Revisionary systematics and evolutionary ecology of Neophylidorea (Diptera: Tipuloidea)

  2010cites this paper
• A supermatrix-based molecular phylogeny of the family Drosophilidae.

  2010cites this paper
• An expressed sequence tag (EST) library for Drosophila serrata, a model system for sexual selection and climatic adaptation studies

  2009cites this paper
• Evolution of Tom, 297, 17.6 and rover retrotransposons in Drosophilidae species

  2009cites this paper
• Comparative Genomics of Drosophila mtDNA: Novel Features of Conservation and Change Across Functional Domains and Lineages

  2009cites this paper
• Distinctive Paleo-Indian migration routes from Beringia marked by two rare mtDNA haplogroups.

  2009cites this paper
• Developmental constraints and convergent evolution in Drosophila sex comb formation

  2009cites this paper
• Factors underlying rapid reproductive protein evolution in Drosophila

  2008cites this paper
• Phylogenetic mixture models can reduce node-density artifacts.

  2008cites this paper
• A supertree analysis and literature review of the genus Drosophila and closely related genera (Diptera, Drosophilidae)

  2008influential citation
• Multiple invasions of Errantivirus in the genus Drosophila

  2008cites this paper
• Phylogenetic incongruence in the Drosophila melanogaster species group.

  2007cites this paper
• Evolutionary pattern of the gtwin retrotransposon in the Drosophila melanogaster subgroup

  2007cites this paper
• História evolutiva dos LTR-retrotransposons Tom, 297, 17.6 e rover em Drosophilidae

  2007cites this paper
• A mitochondrial genome phylogeny of Diptera: whole genome sequence data accurately resolve relationships over broad timescales with high precision

  2007cites this paper
• Evolution of cis-regulatory sequences in Drosophila: A systematic approach

  2007cites this paper
• Universidade Federal do Rio Grande do Sul Programa de Pós Graduação em Genética e Biologia Molecular

  2007cites this paper
• A phylogeny of Drosophilidae using the Amyrel gene: questioning the Drosophila melanogaster species group boundaries

  2007influential citation
• Evolutionary conservation of lampbrush-like loops in drosophilids

  2007cites this paper
• Basal relationships in the Drosophila melanogaster species group.

  2006cites this paper
• Evolução dos Errantivirus gtwin e gypsy no gênero Drosophila

  2006cites this paper
• Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

  2006cites this paper
• Whole Genome Phylogeny of the Drosophila melanogaster Species Subgroup: Widespread Discordance with Species Tree & Evidence for Incomplete Lineage Sorting

  2005cites this paper
• Recent Trends in Molecular Phylogenetic Analysis: Where to Next? Gap Coding Direct Optimization Phylogenetic Inference

  year unknowncites this paper