Prediction of signal recognition particle RNA genes.

No abstract is available for this paper.

• Publication year

  2002

• Venue

  Nucleic Acids Research

• Publication date

  2002-08-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1093/NAR/GKF468PMID 12140321PMCID PMC137091
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Role of SRP RNA in the GTPase cycles of Ffh and FtsY.

  2001influential reference
• The signal recognition particle.

  2001cited by this paper
• The complete genome of the crenarchaeon Sulfolobus solfataricus P2

  2001cited by this paper
• The targeting pathway of Escherichia coli presecretory and integral membrane proteins is specified by the hydrophobicity of the targeting signal

  2001cited by this paper
• Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7.

  2001cited by this paper
• Important role of the tetraloop region of 4.5S RNA in SRP binding to its receptor FtsY.

  2001cited by this paper
• SRPDB (Signal Recognition Particle Database)

  2001cited by this paper
• SRPDB (Signal Recognition Particle Database)

  2000cited by this paper
• Crystal structure of the ribonucleoprotein core of the signal recognition particle.

  2000cited by this paper
• PhyloDraw: a phylogenetic tree drawing system

  2000cited by this paper
• Role of 4.5S RNA in assembly of the bacterial signal recognition particle with its receptor.

  2000cited by this paper
• Flexible sequence similarity searching with the FASTA3 program package.

  2000cited by this paper
• Structure and assembly of the Alu domain of the mammalian signal recognition particle

  2000cited by this paper
• The Alu domain homolog of the yeast signal recognition particle consists of an Srp14p homodimer and a yeast-specific RNA structure.

  1999cited by this paper
• The Structure of Multiple Polypeptide Domains Determines the Signal Recognition Particle Targeting Requirement ofEscherichia coli Inner Membrane Proteins

  1999cited by this paper
• The E. coli signal recognition particle is required for the insertion of a subset of inner membrane proteins.

  1997cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997influential reference
• An upstream U-snRNA gene-like promoter is required for transcription of the Arabidopsis thaliana 7SL RNA gene.

  1995cited by this paper
• RNA sequence analysis using covariance models.

  1994cited by this paper
• GTP binding and hydrolysis by the signal recognition particle during initiation of protein translocation

  1993cited by this paper
• Sequence of the Arabidopsis thaliana 7SL RNA gene.

  1993cited by this paper
• The gene for a 4.5S RNA homolog from Mycoplasma pneumoniae: genetic selection, sequence, and transcription analysis

  1992cited by this paper
• Nucleotide sequence of a Mycoplasma mycoides RNA which is homologous to E. coli 4.5S RNA.

  1990cited by this paper
• The organization and evolution of transfer RNA genes in Mycoplasma capricolum.

  1990cited by this paper
• Structure of the archaebacterial 7S RNA molecule

  1990cited by this paper
• The yeast Yarrowia lipolytica has two, functional, signal recognition particle 7S RNA genes

  1990cited by this paper
• The most abundant small cytoplasmic RNA of Saccharomyces cerevisiae has an important function required for normal cell growth

  1989cited by this paper
• The 4.5S RNA gene from Pseudomonas aeruginosa.

  1989cited by this paper
• On finding all suboptimal foldings of an RNA molecule.

  1989cited by this paper
• Identification of an essential Schizosaccharomyces pombe RNA homologous to the 7SL component of signal recognition particle

  1988cited by this paper
• Alu sequences are processed 7SL RNA genes

  1984cited by this paper
• Cloning and sequence analysis of the Escherichia coli 4.5 S RNA gene.

  1984cited by this paper
• The 4.5 S RNA gene of Escherichia coli is essential for cell growth.

  1984cited by this paper
• Human 7SL RNA consists of a 140 nucleotide middle-repetitive sequence inserted in an alu sequence.

  1982cited by this paper

• Vestiges of the Bacterial Signal Recognition Particle-Based Protein Targeting in Mitochondria

  2021cites this paper
• Compensating Complete Loss of Signal Recognition Particle During Co-translational Protein Targeting by the Translation Speed and Accuracy

  2021influential citation
• RNA-seq with RNase H-based ribosomal RNA depletion specifically designed for C. elegans

  2020cites this paper
• Structure, dynamics and interactions of large SRP variants

  2019cites this paper
• Co‐translational protein targeting in bacteria

  2018cites this paper
• A Genome-Wide Prediction and Identification of Intergenic Small RNAs by Comparative Analysis in Mesorhizobium huakuii 7653R

  2017cites this paper
• Insights into the function and activity mechanism of stress-induced small non-coding RNAs and the endoribonuclease ybey in the legume symbiont sinorhizobium meliloti

  2017cites this paper
• Computational genomics of lactobacilli

  2015cites this paper
• Noncanoncial signal recognition particle RNAs in a major eukaryotic phylum revealed by purification of SRP from the human pathogen Cryptococcus neoformans

  2015cites this paper
• Annotating functional RNAs in genomes using Infernal.

  2014cites this paper
• mRNA-programmed translation pauses in the targeting of E. coli membrane proteins

  2014cites this paper
• RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods

  2014cites this paper
• A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes

  2014cites this paper
• Annotating RNA motifs in sequences and alignments

  2014cites this paper
• Class-specific prediction of ncRNAs.

  2014influential citation
• Signal recognition particle RNA in dinoflagellates and the Perkinsid Perkinsus marinus.

  2013cites this paper
• Architecture and evolution of a minute plant genome

  2013cites this paper
• Mutation in a primate-conserved retrotransposon reveals a noncoding RNA as a mediator of infantile encephalopathy

  2012cites this paper
• TESIS PARA OPTAR AL TÍTULO DE INGENIERO CIVIL EN BIOTECNOLOGÍA Y MAGÍSTER EN CIENCIAS DE LA INGENIERÍA

  2012cites this paper
• Evolution from the Prokaryotic to the Higher Plant Chloroplast Signal Recognition Particle: The Signal Recognition Particle RNA Is Conserved in Plastids of a Wide Range of Photosynthetic Organisms[W]

  2012cites this paper
• Computational analysis of noncoding RNAs

  2012cites this paper
• New Clues about the Evolutionary History of Metabolic Losses in Bacterial Endosymbionts, Provided by the Genome of Buchnera aphidicola from the Aphid Cinara tujafilina

  2011cites this paper
• Serratia symbiotica from the Aphid Cinara cedri: A Missing Link from Facultative to Obligate Insect Endosymbiont

  2011cites this paper
• Evolution of proteins and non-coding RNAs genes studied with comparative genomics

  2011cites this paper
• Metatranscriptomic Analysis of Microbes in an Oceanfront Deep-Subsurface Hot Spring Reveals Novel Small RNAs and Type-Specific tRNA Degradation

  2011cites this paper
• Complete Chloroplast Genome Sequence of Freshwater Araphid Pennate Diatom Alga Synedra acus from Lake Baikal

  2011cites this paper
• Re-annotation of the Campylobacter jejuni NCTC11168 genome and functional characterisation of selected genes involved in strain pathogenesis

  2011cites this paper
• Systematic identification of independent functional non-coding RNA genes in Oxytricha trifallax

  2011cites this paper
• In silico prediction of active RNA genes in legumes

  2011cites this paper
• Sequence and structure analysis of noncoding RNAs.

  2010cites this paper
• Archaea Signal Recognition Particle Shows the Way

  2010cites this paper
• Small RNAs of Pseudomonas spp.

  2010cites this paper
• Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array

  2010cites this paper
• Identification of amino acid residues in protein SRP72 required for binding to a kinked 5e motif of the human signal recognition particle RNA

  2010cites this paper
• Secretion of Heterologous Proteins, Gram-Positive Bacteria, Lactococcus lactis

  2010cites this paper
• ANALYSES OF THE COMPLETE CHLOROPLAST GENOME SEQUENCES OF TWO MEMBERS OF THE PELAGOPHYCEAE: AUREOCOCCUS ANOPHAGEFFERENS CCMP1984 AND AUREOUMBRA LAGUNENSIS CCMP1507 1

  2010cites this paper
• Structural rna homology search and alignment using covariance models

  2009cites this paper
• Evolutionary Convergence and Nitrogen Metabolism in Blattabacterium strain Bge, Primary Endosymbiont of the Cockroach Blattella germanica

  2009cites this paper
• Infernal 1.0: inference of RNA alignments

  2009cites this paper
• Kinship in the SRP RNA family

  2009cites this paper
• Coordination of Cotranslational Protein Targeting to the Membrane

  2009cites this paper
• Computational Approaches to the Identification and Characterization of Non-Coding RNA Genes

  2009cites this paper
• Conserved and variable domains of RNase MRP RNA

  2009cites this paper
• Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains

  2008cites this paper
• Genome Structure of the Legume, Lotus japonicus

  2008cites this paper
• Small RNA gene identification and mRNA target predictions in bacteria

  2008cites this paper
• SRP RNA controls a conformational switch regulating the SRP–SRP receptor interaction

  2008cites this paper
• Computational methods in noncoding RNA research

  2008cites this paper
• Roles for Srp72p in assembly, nuclear export and function of the signal recognition particle

  2008cites this paper
• The 5e motif of eukaryotic signal recognition particle RNA contains a conserved adenosine for the binding of SRP72.

  2008influential citation
• Computational Identification of Small RNAs in Clostridium acetobutylicum and Prediction of mRNA Targets

  2008cites this paper
• Query-Dependent Banding (QDB) for Faster RNA Similarity Searches

  2007influential citation
• Evolution of the iron-responsive element.

  2007cites this paper
• Distant segments of Saccharomyces cerevisiae scR1 RNA promote assembly and function of the signal recognition particle.

  2007cites this paper
• Computational identification of non-coding RNAs

  2007cites this paper
• RNAs everywhere: genome-wide annotation of structured RNAs.

  2007cites this paper
• Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence

  2007cites this paper
• Small Nucleolar RNAs: Identification, Structure, and Function

  2006cites this paper
• RNAs everywhere: genome-wide annotation of structured RNAs.

  2006cites this paper
• Rooting the tree of life by transition analyses

  2006influential citation
• Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change

  2006cites this paper
• Accurate annotation of non-coding RNAs in practical time

  2005cites this paper
• A nomenclature for all signal recognition particle RNAs.

  2005cites this paper
• RNA Gene Prediction

  2005cites this paper
• The tmRDB and SRPDB resources

  2005cites this paper
• Plant 7SL RNA genes belong to type 4 of RNA polymerase III- dependent genes that are composed of mixed promoters.

  2005cites this paper
• C. elegans noncoding RNA genes.

  2005cites this paper
• Identification and analysis of ribonuclease P and MRP RNA in a broad range of eukaryotes

  2005cites this paper
• Evolutionary patterns of non-coding RNAs

  2005cites this paper
• Identification of an RNA-binding domain in human SRP72.

  2005cites this paper
• MSARI: multiple sequence alignments for statistical detection of RNA secondary structure.

  2004cites this paper
• Saccharomyces SRP RNA secondary structures: a conserved S-domain and extended Alu-domain.

  2004influential citation
• Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics.

  2004cites this paper
• Identification of chloroplast signal recognition particle RNA genes.

  2004influential citation
• Alu's dimeric consensus sequence destabilizes its transcripts.

  2004cites this paper
• Identification and comparative analysis of components from the signal recognition particle in protozoa and fungi

  2004cites this paper
• SRPDB: Signal Recognition Particle Database

  2003cites this paper
• Structural insights into the signal recognition particle.

  2003cites this paper
• Protein A‐tagging for purification of native macromolecular complexes from Candida albicans

  2003cites this paper
• Discovery of RNA structural elements using evolutionary computation.

  2002cites this paper
• of the Bacterial Signal Recognition Particle-Based

  year unknowncites this paper