A common reference for cDNA microarray hybridizations.

No abstract is available for this paper.

• Publication year

  2002

• Venue

  Nucleic Acids Research

• Publication date

  2002-11-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1093/NAR/GNF115PMID 12409475PMCID PMC135839
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Variance stabilization applied to microarray data calibration and to the quantification of differential expression

  2002cited by this paper
• Promoter-specific regulation of MyoD binding and signal transduction cooperate to pattern gene expression.

  2002cited by this paper
• Gene expression profiling predicts clinical outcome of breast cancer

  2002cited by this paper
• Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range

  2002cited by this paper
• Comparison of gene expression in CD34+ cells from bone marrow and G-CSF-mobilized peripheral blood by high-density oligonucleotide array analysis.

  2001cited by this paper
• Preparation and screening of high-density cDNA arrays with genomic clones.

  2001cited by this paper
• Missing value estimation methods for DNA microarrays

  2001cited by this paper
• An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression.

  2001cited by this paper
• Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects.

  2001cited by this paper
• Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

  2000cited by this paper
• Systematic variation in gene expression patterns in human cancer cell lines

  2000influential reference
• A gene expression database for the molecular pharmacology of cancer

  2000cited by this paper
• Gene expression profiles of laser-captured adjacent neuronal subtypes

  1999cited by this paper
• The lymphochip: a specialized cDNA microarray for the genomic-scale analysis of gene expression in normal and malignant lymphocytes.

  1999cited by this paper
• DNA arrays for analysis of gene expression.

  1999cited by this paper
• Distinctive gene expression patterns in human mammary epithelial cells and breast cancers.

  1999cited by this paper
• Array of hope

  1999cited by this paper
• Gene expression profiling of alveolar rhabdomyosarcoma with cDNA microarrays.

  1998cited by this paper
• Exploring the metabolic and genetic control of gene expression on a genomic scale.

  1997cited by this paper
• The I.M.A.G.E. Consortium: an integrated molecular analysis of genomes and their expression.

  1996cited by this paper
• Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray

  1995cited by this paper
• Amplified RNA synthesized from limited quantities of heterogeneous cDNA.

  1990cited by this paper

• Expression Profiling of Differentially Regulated Genes in Fanconi Anemia.

  2018cites this paper
• adult mouse skeletal muscle fibers in fast-to-slow fiber type transformation of cultured Roles of the calcineurin and CaMK signaling pathways

  2015cites this paper
• An efficient clahe-based, spot-adaptive, image segmentation technique for improving microarray genes' quantification

  2015cites this paper
• Improving microarray spots segmentation by k-means driven adaptive image restoration

  2015cites this paper
• Novel fluorescent dyes for single DNA molecule techniques.

  2013cites this paper
• Gene expression profiling of three different stressors in the water flea Daphnia magna

  2013cites this paper
• Multipurpose Instantaneous Microarray Detection of Acute Encephalitis Causing Viruses and Their Expression Profiles

  2012cites this paper
• Genomic profiling: cDNA arrays and oligoarrays.

  2012cites this paper
• microRNA expression profile and differentially-expressed genes in prolactinomas following bromocriptine treatment.

  2012cites this paper
• Towards Optimal Microarray Universal Reference Sample Designs: An In-Silico Optimization Approach

  2012cites this paper
• An Investigation into the Colorectal Cancer Chemopreventive Mechanisms of 3’, 4’, 5’, 5, 7-Pentamethoxyflavone (PMF)

  2012cites this paper
• A Novel Normalization Approach for MicroRNA Quantitative PCR*: A Novel Normalization Approach for MicroRNA Quantitative PCR*

  2011cites this paper
• Transcriptional Profiling of Organ‐Specific Autoimmunity in Human

  2011cites this paper
• Transcriptional Profiling of the Iron Starvation Response in Bordetella pertussis Provides New Insights into Siderophore Utilization and Virulence Gene Expression

  2011cites this paper
• The Antiproliferative Effect of Dietary Fiber Phenolic Compounds Ferulic Acid and p-Coumaric Acid on the Cell Cycle of Caco-2 Cells

  2011cites this paper
• Statistical Applications in Genetics and Molecular Biology On Reference Designs For Microarray Experiments

  2011cites this paper
• Tungsten carbide cobalt nanoparticles exert hypoxia-like effects on the gene expression level in human keratinocytes

  2010influential citation
• Transcriptomic “portraits” of canine mammary cancer cell lines with various phenotypes

  2010cites this paper
• Best practices for hybridization design in two-colour microarray analysis.

  2009cites this paper
• Drug metabolizing enzymes and transporters mRNA in peripheral blood mononuclear cells of healthy subjects: biological variations and importance of pre-analytical steps.

  2009cites this paper
• Comparability of Microarray Experiments from the Instrument and the Sample Site and Approaches Towards Standardization

  2008cites this paper
• Genome-Wide Oligonucleotide Microarray Analysis of Gene-Expression Profiles of Taiwanese Patients with Anaplastic Astrocytoma and Glioblastoma Multiforme

  2008cites this paper
• A computational approach to microarray universal reference sample

  2008cites this paper
• Roles of the calcineurin and CaMK signaling pathways in fast-to-slow fiber type transformation of cultured adult mouse skeletal muscle fibers.

  2007cites this paper
• Introduction: array technology - an overview.

  2007cites this paper
• Effective Quantification of Gene Expression Levels in Microarray Images Using a Spot-Adaptive Compound Clustering-Enhancement-Segmentation Scheme

  2007cites this paper
• Review: Practical Design and Analysis of 2-Colour cDNA Microarray Experiments

  2007cites this paper
• A clustering coefficient for weighted networks, with application to gene expression data

  2007cites this paper
• Hybridization detection of DNA by measuring organic small molecule amplified resonance light scattering signals.

  2007cites this paper
• Genomic DNA as a general cohybridization standard for ratiometric microarrays.

  2006cites this paper
• Improving reliability and performance of DNA microarrays

  2006cites this paper
• Molecular mechanisms in muscular dystrophy : a gene expression profiling study.

  2006cites this paper
• Gene expression profiling highlights defective myogenesis in DMD patients and a possible role for bone morphogenetic protein 4.

  2006cites this paper
• Improving Microarray Spots Segmentation by K-Means driven Adaptive Image Restoration

  2006cites this paper
• [DNA microarrays in parasitology and medical sciences].

  2006cites this paper
• A universal reference sample derived from clone vector for improved detection of differential gene expression

  2006cites this paper
• Reverse transcription using random pentadecamer primers increases yield and quality of resulting cDNA.

  2006cites this paper
• WIENER-BASED DECONVOLUTION METHODS FOR IMPROVING THE ACCURACY OF SPOT SEGMENTATION IN MICROARRAY IMAGES

  2006cites this paper
• Release of extraction-resistant mRNA in stationary phase Saccharomyces cerevisiae produces a massive increase in transcript abundance in response to stress

  2006cites this paper
• "Per cell" normalization method for mRNA measurement by quantitative PCR and microarrays

  2006cites this paper
• Correction: Release of extraction-resistant mRNA in stationary phase Saccharomyces cerevisiae produces a massive increase in transcript abundance in response to stress

  2006cites this paper
• Evaluation of the gene-specific dye bias in cDNA microarray experiments

  2005cites this paper
• Using a microfluidic device for 1 μl DNA microarray hybridization in 500 s

  2005cites this paper
• A guide to issues in microarray analysis: application to endometrial biology.

  2005cites this paper
• Quantitative analysis of tumor mitochondrial RNA using microarray.

  2005cites this paper
• Transcript profiling of small tissue samples using microarray technology

  2005cites this paper
• A history of microarrays in biomedicine

  2005cites this paper
• cDNA expression profiling of chondrosarcomas: Ollier disease resembles solitary tumours and alteration in genes coding for components of energy metabolism occurs with increasing grade

  2005cites this paper
• Gene-expression profiling and the future of adjuvant therapy.

  2005cites this paper
• Transit Tumor Retrieval Preserves RNA Fidelity and Obviates Snap-Freezing

  2005cites this paper
• Transcript profiles of Blumeria graminis development during infection reveal a cluster of genes that are potential virulence determinants.

  2005cites this paper
• The development of microarray standards

  2005cites this paper
• New advances in microarrays: finding the genes causally involved in disease.

  2005cites this paper
• Near‐optimal designs for dual channel microarray studies

  2005cites this paper
• Gene-Expression Profiling and the Future of Adjuvant Therapy

  2005cites this paper
• Studies of the global gene expression changes in alcoholic human brain and blood

  2005cites this paper
• Optimisation of cDNA microarray tumour profiling and molecular analysis of epithelial ovarian cancer

  2005cites this paper
• ELECTROOSMOTIC MIXING INDUCED BY NON-UNIFORM ZETA POTENTIAL AND APPLICATION FOR DNA MICROARRAY IN MICROFLUIDIC CHANNEL

  2005cites this paper
• Absolute expression values for mouse transcripts: re‐annotation of the READ expression database by the use of CAGE and EST sequence tags

  2004cites this paper
• Simulated annealing for near-optimal dual-channel microarray designs

  2004cites this paper
• Universal mouse reference RNA derived from neonatal mice.

  2004cites this paper
• Comparison of microarray-based mRNA profiling technologies for identification of psychiatric disease and drug signatures.

  2004cites this paper
• Development of a new reference standard for microarray experiments.

  2004cites this paper
• Removal of template DNA from cRNA preparations by combined oligo (dT) affinity chromatography and DNase I digestion.

  2004cites this paper
• Large-scale gene expression analysis of human skeletal myoblast differentiation.

  2004cites this paper
• DNA Microarrays: Experimental Issues, Data Analysis, and Application to Bacterial Systems

  2004cites this paper
• Genomic DNA as a cohybridization standard for mammalian microarray measurements.

  2004cites this paper
• Fluorescent labelling of cRNA for microarray applications

  2003cites this paper
• Standardization of protocols in cDNA microarray analysis.

  2003cites this paper
• Quantitative cytokine gene expression in human tonsils at excision and during histoculture assessed by standardized and calibrated real-time PCR and novel data processing.

  2003cites this paper
• Comparison and meta-analysis of microarray data: from the bench to the computer desk.

  2003cites this paper
• Current Awareness on Comparative and Functional Genomics

  2003cites this paper
• Fluorescent labelling of cRNA for microarray applications.

  2003cites this paper
• Fibroids display an anti-angiogenic gene expression profile when compared with adjacent myometrium.

  2003cites this paper
• European consortia building integrated resources for Arabidopsis functional genomics.

  2003cites this paper
• DNA microarrays in parasitology: strengths and limitations.

  2003cites this paper
• Use of the cDNA microarray technology in thesafety assessment of GM food plants

  2003cites this paper
• Validation of cDNA microarray analysis to distinguish tumor type ex vivo.

  2003cites this paper
• Use of the cDNA microarray technology in the safety assessment of GM food plants Use of the cDNA microarray technology in the safety assessment of GM food plants

  2003cites this paper
• Microarray analysis: a novel research tool for cardiovascular scientists and physicians

  2003cites this paper
• Use of the cDNA microarray technology in the safety assessment of GM food plants Use of the cDNA microarray technology in the safety assessment of GM food plants

  2003cites this paper
• Current Awareness on Comparative and Functional Genomics

  2003cites this paper
• Monitoring global messenger RNA changes in externally controlled microarray experiments

  2003cites this paper
• Identification and handling of artifactual gene expression profiles emerging in microarray hybridization experiments

  year unknowncites this paper