Evolution of codon usage and base contents in kinetoplastid protozoans.

No abstract is available for this paper.

• Publication year

  1994

• Venue

  Molecular biology and evolution

• Publication date

  1994-09-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1093/OXFORDJOURNALS.MOLBEV.A040159PMID 7968492
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Evolutionary aspects of trypanosomes: Analysis of genes

  2005cited by this paper
• The calmodulin-ubiquitin associated genes of Trypanosoma cruzi: their identification and transcription.

  1993cited by this paper
• Crithidia fasciculata contains a transcribed leishmanial surface proteinase (gp63) gene homologue.

  1993cited by this paper
• Trypanosomatidae codon usage and GC distribution.

  1992cited by this paper
• Molecular characterization of a Leishmania donovani infantum antigen identified as histone H2A.

  1992cited by this paper
• Leishmania: codon utilization of nuclear genes.

  1992cited by this paper
• Evolution of codon usage patterns: the extent and nature of divergence between Candida albicans and Saccharomyces cerevisiae.

  1992cited by this paper
• Multidrug resistance in Leishmania donovani is conferred by amplification of a gene homologous to the mammalian mdr1 gene

  1992cited by this paper
• The major cysteine proteinase (cruzipain) from Trypanosoma cruzi is encoded by multiple polymorphic tandemly organized genes located on different chromosomes.

  1992cited by this paper
• Directional mutation pressure, selective constraints, and genetic equilibria

  1992cited by this paper
• Amplification and molecular cloning of the ornithine decarboxylase gene of Leishmania donovani.

  1992cited by this paper
• Trypanosoma brucei: analysis of codon usage and nucleotide composition of nuclear genes.

  1991cited by this paper
• Evolution of parasitism: kinetoplastid protozoan history reconstructed from mitochondrial rRNA gene sequences.

  1991influential reference
• Codon usage tabulated from the GenBank genetic sequence data.

  1991cited by this paper
• Codon usage tabulated from the GenBank genetic sequence data.

  1990cited by this paper
• Processes of genome evolution reflected by base frequency differences among Serratia marcescens genes

  1990cited by this paper
• A gene from the VSG expression site of Trypanosoma brucei encodes a protein with both leucine-rich repeats and a putative zinc finger.

  1990cited by this paper
• Switches in species-specific codon preferences: The influence of mutation biases

  1990cited by this paper
• The influence of temperature and serum deprivation on the synthesis of heat-shock proteins and alpha and beta tubulin in promastigotes of Leishmania major.

  1989cited by this paper
• A transcriptional analysis of the Trypanosoma brucei hsp83 gene cluster.

  1989influential reference
• Expression site associated genes of Trypanosoma brucei rhodesiense.

  1989cited by this paper
• Sequence and expression of the glycosyl-phosphatidylinositol-specific phospholipase C of Trypanosoma brucei.

  1989cited by this paper
• The genes and transcripts of an antigen gene expression site from T. brucei.

  1989cited by this paper
• Structure, genomic organization and transcription of the bifunctional dihydrofolate reductase-thymidylate synthase gene from Crithidia fasciculata.

  1989cited by this paper
• Codon usage and gene expression level in Dictyostelium discoideum: highly expressed genes do 'prefer' optimal codons.

  1989influential reference
• Identification of 'Old World' Leishmania by DNA recombinant probes.

  1989cited by this paper
• Genes encoding the major surface glycoprotein in Leishmania are tandemly linked at a single chromosomal locus and are constitutively transcribed.

  1989cited by this paper
• Evolution of parasitism: kinetoplastid protozoan history reconstructed from mitochondrial rRNA gene sequences.

  1988cited by this paper
• Polygene transcripts are precursors to calmodulin mRNAs in trypanosomes.

  1988cited by this paper
• Codon usage tabulated from the GenBank Genetic Sequence Data.

  1988cited by this paper
• Directional mutation pressure and neutral molecular evolution.

  1988cited by this paper
• Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases.

  1987cited by this paper
• Cloning and sequencing of the ornithine decarboxylase gene from Trypanosoma brucei. Implications for enzyme turnover and selective difluoromethylornithine inhibition.

  1987cited by this paper
• Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons.

  1986cited by this paper
• Glycolytic enzymes of Trypanosoma brucei. Simultaneous purification, intraglycosomal concentrations and physical properties.

  1986influential reference
• Tubulin genes are tandemly linked and clustered in the genome of trypanosoma brucei.

  1983cited by this paper
• Surface antigens of Leishmania donovani promastigotes

  1983cited by this paper
• Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs.

  1982cited by this paper
• Codon selection in yeast.

  1982cited by this paper
• Codon usage in bacteria: correlation with gene expressivity.

  1982cited by this paper
• Biochemistry of the variant surface glycoproteins of salivarian trypanosomes.

  1982cited by this paper
• Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes.

  1981cited by this paper
• Nucleotide sequence divergence and functional constraint in mRNA evolution.

  1980influential reference
• Codon catalog usage and the genome hypothesis.

  1980cited by this paper

• Molecular Diversity, Selection Pressure, and Structural Modeling of Actin in Trypanosoma evansi isolates.

  2025cites this paper
• The Contribution of Cartography in Risk Management of Vector-Borne Diseases: Cas of Leishmaniasis in the Fez-Meknes, Region of Morocco

  2020cites this paper
• Geographical information systems (GIS) and epidemiology of vector diseases: case of leishmaniasis in the Fez-Meknes, region of Morocco

  2019cites this paper
• Codon usage bias controls mRNA and protein abundance in trypanosomatids

  2018cites this paper
• The Dynamics of Lateral Gene Transfer in Genus Leishmania - A Route for Adaptation and Species Diversification

  2016cites this paper
• Comparison of codon usage bias across Leishmania and Trypanosomatids to understand mRNA secondary structure, relative protein abundance and pathway functions.

  2015cites this paper
• Statistical Analysis of codon usage in extremely halophilic bacterium , Salinibacter ruber DSM 13855

  2013cites this paper
• Analysis of genomic characters reveals that four distinct gene clusters are correlated with different functions in Burkholderia cenocepacia AU 1054

  2013cites this paper
• Transcriptome analysis of the bloodstream stage from the parasite Trypanosoma vivax

  2013cites this paper
• Trends in the codon usage patterns of Chromohalobacter salexigens genes

  2012cites this paper
• The Genetic Code of the Candida CTG Clade

  2012cites this paper
• Caracterización de las proteínas LABCG1 y LABCG5 de Leishmania: implicación en el tráfico intracelular de hemo y en la infección de macrófagos

  2011cites this paper
• Analysis of the genome and proteome composition of Bdellovibrio bacteriovorus: indication for recent prey-derived horizontal gene transfer.

  2011cites this paper
• Patterns of nucleotides that flank substitutions in human orthologous genes

  2010cites this paper
• Synonymous Codon Usage Analysis of Thirty Two Mycobacteriophage Genomes

  2010cites this paper
• Caracterización molecular de los genes codificantes de la proteína de choque térmico de 70 kDa (HSP70) de Trypanosoma rangeli

  2010cites this paper
• Codon and Aminoacid Usage Patterns in Mycobacteria

  2009cites this paper
• General Preadaptation of Viral Infectors to Their Hosts

  2008cites this paper
• Codon usage suggests that translational selection has a major impact on protein expression in trypanosomatids

  2008cites this paper
• Synonymous codon usage in different protein secondary structural classes of human genes: Implication for increased non-randomness of GC3 rich genes towards protein stability

  2007cites this paper
• The factors shaping synonymous codon usage in the genome of Burkholderia mallei.

  2007cites this paper
• Glycoprotein 63 (gp63) genes show gene conversion and reveal the evolution of Old World Leishmania.

  2007cites this paper
• Comparative codon and amino acid composition analysis of Tritryps‐conspicuous features of Leishmania major

  2007cites this paper
• Amino acid and codon use: in two influenza viruses and three hosts.

  2007cites this paper
• A Solanesyl-diphosphate Synthase Localizes in Glycosomes of Trypanosoma cruzi*

  2006cites this paper
• Genomic Feature Identification in Trypanosomatid Parasites

  2006influential citation
• Studies on cathepsin B of Eimeria tenella and pyroglutamyl peptidase of Leishmania major

  2005cites this paper
• Proteome Composition in Plasmodium falciparum: Higher Usage of GC-Rich Nonsynonymous Codons in Highly Expressed Genes

  2005cites this paper
• The effect of expression levels on codon usage in Plasmodium falciparum

  2004cites this paper
• A Leishmania donovani gene that confers accelerated recovery from stationary phase growth arrest.

  2004cites this paper
• Two linked genes of Leishmania infantum encode tryparedoxins localised to cytosol and mitochondrion.

  2004cites this paper
• Conserved nucleotides surrounding the trans-splicing acceptor site and the translation initiation codon in Leishmania genes.

  2003cites this paper
• Sequence analysis of the Leishmania mexicana amastigote specific gene a600

  2002cites this paper
• Correlations Between mRNA Expression Levels and GC Contents of Coding and Untranslated Regions of Genes in Rodents

  2002cites this paper
• DNA thermodynamic pressure: a potential contributor to genome evolution.

  2002cites this paper
• Gene expressivity is the main factor in dictating the codon usage variation among the genes in Pseudomonas aeruginosa.

  2001cites this paper
• Evidence for translational selection in codon usage in Echinococcus spp.

  2001cites this paper
• Compositional pressure and translational selection determine codon usage in the extremely GC-poor unicellular eukaryote Entamoeba histolytica.

  2000cites this paper
• Nonrandom spatial distribution of synonymous substitutions in the GP63 gene from Leishmania.

  2000cites this paper
• Studies on the relationships between the synonymous codon usage and protein secondary structural units.

  2000cites this paper
• Trends of amino acid usage in the proteins from the unicellular parasite Giardia lamblia.

  2000cites this paper
• Synonymous Codon Choices in the Extremely GC-Poor Genome of Plasmodium falciparum: Compositional Constraints and Translational Selection

  1999influential citation
• Genomic organization, transcription, splicing and gene regulation in Leishmania.

  1999cites this paper
• The Leishmania genome comes of Age.

  1999cites this paper
• The complete chromosomal organization of the reference strain of the Leishmania Genome Project, L. major ;Friedlin'.

  1998cites this paper
• Identification and characterisation of a functional peroxidoxin from Leishmania major.

  1998cites this paper
• Heterogeneity in Codon Usage in the Flatworm Schistosoma mansoni

  1998cites this paper
• Comparison and Evolutionary Analysis of the Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase from Different Kinetoplastida

  1998cites this paper
• Molecular cloning of the gene encoding the 83 kDa amastigote surface protein and its identification as a member of the Trypanosoma cruzi sialidase superfamily.

  1997cites this paper
• Cloning of a trypanosomatid gene coding for an ornithine decarboxylase that is metabolically unstable even though it lacks the C-terminal degradation domain.

  1997cites this paper
• The Leishmania hertigi (Kinetoplastida; Trypanosomatidae) Complex and the Lizard Leishmania: Their Classification and Evidence for a Neotropical Origin of the Leishmania‐Endotrypanum Clade

  1997cites this paper
• Monophyletic origin of the genus Sauroleishmania

  1997cites this paper
• Cloning and sequence analysis of the DNA polymerase alpha gene of Leishmania donovani: comparison with the human homologue.

  1997cites this paper
• The analysis of protein coding genes suggests monophyly of Trypanosoma.

  1996cites this paper
• Codon usage and genome evolution.

  1994cites this paper