Illumina-based analysis of endophytic bacterial diversity of tree peony (Paeonia Sect. Moutan) roots and leaves

Diverse communities of bacteria inhabit plant tissues and those bacteria play a crucial role for plant health and growth. Tree peony (Paeonia Sect. Moutan) is known for its excellent ornamental and medicinal values as Chinese traditional plant, but little is known about its associated bacterial community under natural conditions. To examine how endophytic bacteria in tree peony vary across tissues and cultivars, PCR-based Illumina was applied to reveal the diversity of endophytic bacteria in tree peony. A total of 149,842 sequences and 21,463 operational taxonomic units (OTUs) were obtained. The OTU abundance of roots was higher than leaves across other three cultivars except for ‘Kinkaku’ and ‘Luoyanghong’. The community was composed of five dominant groups (Proteobacteria, Firmicutes, Bacteroidetes, Acidobacteria and Actinobacteria) in all samples. Endophytic bacteria community structures had changed in leaves and roots. Sequences of Pseudomonas and Enterobacteriaceae were prevalent in root samples, whereas Succinivibrio and Acinetobacter were the dominant genus in leaf samples. Otherwise, the distribution of each dominant genus among the 5 cultivars was either varied. These findings suggested that both plant genotype and tissues contribute to the shaping of the bacterial communities associated with tree peony.

• Publication year

  2017

• Venue

  Brazilian Journal of Microbiology

• Publication date

  2017-06-02

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/j.bjm.2017.02.009PMID 28606427PMCID 5628320
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Endophytic bacteria and their potential application in agriculture: A review 

  2019cited by this paper
• Diversity of endophytic and rhizoplane bacterial communities associated with exotic Spartina alterniflora and native mangrove using Illumina amplicon sequencing.

  2015cited by this paper
• Endophytic actinobacteria of medicinal plants: diversity and bioactivity

  2015cited by this paper
• Transcriptome Profiling of the Endophyte Burkholderia phytofirmans PsJN Indicates Sensing of the Plant Environment and Drought Stress

  2015cited by this paper
• Isolation of ACC deaminase-producing habitat-adapted symbiotic bacteria associated with halophyte Limonium sinense (Girard) Kuntze and evaluating their plant growth-promoting activity under salt stress

  2014cited by this paper
• The role of short-chain dehydrogenase/oxidoreductase, induced by salt stress, on host interaction of B. pseudomallei

  2014cited by this paper
• The communities of tomato (Solanum lycopersicum L.) leaf endophytic bacteria, analyzed by 16S-ribosomal RNA gene pyrosequencing.

  2014cited by this paper
• Endophytic bacterial community of grapevine leaves influenced by sampling date and phytoplasma infection process

  2014cited by this paper
• Selective photoinactivation of Candida albicans in the non-vertebrate host infection model Galleria mellonella

  2013cited by this paper
• Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

  2013cited by this paper
• Friend or foe? A review of the mechanisms that drive Serratia towards diverse lifestyles.

  2013cited by this paper
• Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

  2013cited by this paper
• Quorum sensing and indole-3-acetic acid degradation play a role in colonization and plant growth promotion of Arabidopsis thaliana by Burkholderia phytofirmans PsJN.

  2013cited by this paper
• Isolation and characterization of endophytic bacteria from Plectranthus tenuiflorus medicinal plant in Saudi Arabia desert and their antimicrobial activities

  2013cited by this paper
• Culture dependent and independent analysis of bacterial communities associated with commercial salad leaf vegetables

  2013cited by this paper
• Community terminal restriction fragment length polymorphisms reveal insights into the diversity and dynamics of leaf endophytic bacteria

  2013cited by this paper
• Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

  2012cited by this paper
• Rice root-associated bacteria: insights into community structures across 10 cultivars.

  2011cited by this paper
• Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

  2011cited by this paper
• Culturable bacterial community analysis in the root domains of two varieties of tree peony (Paeonia ostii).

  2011cited by this paper
• Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

  2010cited by this paper
• Effect of bacterial inoculation, plant genotype and developmental stage on root-associated and endophytic bacterial communities in potato (Solanum tuberosum)

  2010cited by this paper
• QIIME allows analysis of high-throughput community sequencing data

  2010cited by this paper
• Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization

  2010cited by this paper
• Pyrosequencing Reveals a Highly Diverse and Cultivar-Specific Bacterial Endophyte Community in Potato Roots

  2010cited by this paper
• Microbiome Profiling by Illumina Sequencing of Combinatorial Sequence-Tagged PCR Products

  2010cited by this paper
• Advances in the Breeding of Tree Peonies and a Cultivar System for the Cultivar Group Fangyun Cheng

  2009cited by this paper
• Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

  2009cited by this paper
• Bacterial Community Variation in Human Body Habitats Across Space and Time

  2009cited by this paper
• Endophytes: exploiting biodiversity for the improvement of natural product-based drug discovery

  2008cited by this paper
• Evolution of Mammals and Their Gut Microbes

  2008cited by this paper
• The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

  2008cited by this paper
• Bacterial endophytes: recent developments and applications.

  2008cited by this paper
• Isolation and biodiversity of bacterial endophytes

  2007cited by this paper
• Microbial Population Structures in the Deep Marine Biosphere

  2007cited by this paper
• The diversity and biogeography of soil bacterial communities.

  2006cited by this paper
• Inhibition of nitric oxide and tumor necrosis factor‐alpha by Moutan Cortex in activated mouse peritoneal macrophages

  2006cited by this paper
• Use of Plant Growth-Promoting Bacteria for Biocontrol of Plant Diseases: Principles, Mechanisms of Action, and Future Prospects

  2005cited by this paper
• Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species Richness

  2005cited by this paper
• Natural products from endophytic microorganisms.

  2004cited by this paper
• Paeoniflorin, a novel heat shock protein–inducing compound

  2004cited by this paper
• Opportunistic Colonization Ralstonia solanacearum-Infected Plants by Acinetobacter sp. and Its Natural Competence Development

  2002cited by this paper
• Effect of host genotype on indigenous bacterial endophytes of cotton (Gossypium hirsutum L.)

  2002cited by this paper
• Endophytic Bacteria and Their Potential Applications

  2002cited by this paper
• The causes of Pseudomonas diversity.

  2000cited by this paper
• Differences in the microbial communities associated with the roots of different cultivars of canola and wheat

  1998cited by this paper
• Bacterial endophytes in agricultural crops

  1997cited by this paper
• Glucose and carbon dioxide metabolism by Succinivibrio dextrinosolvens

  1993cited by this paper

• Functional and Taxonomic Insights into Root Endophytic Bacterial Communities in Hybrid Tomato and Finger Millet: Implications for Crop Resilience and Growth

  2025cites this paper
• Plant tissue type and mineral contents shape endophytic bacterial communities in the Sisrè berry plant [Synsepalum dulcificum (Schumach & Thonn.) Daniell] in Benin

  2025cites this paper
• Exploring the Role of Vertical and Horizontal Pathways in the Formation of Lettuce Plant Endospheric Bacterial Communities: A Comparative Study of Hydroponic and Soil Systems

  2025cites this paper
• Plant growth-promoting endophytic microbiota from garlic bulbs

  2025cites this paper
• Insight into endophytic microbiota-driven geographical and bioactive signatures toward a novel quality assessment model for Codonopsis Radix.

  2025cites this paper
• Meta-analysis of root-associated bacterial communities of widely distributed native and invasive Poaceae plants in Antarctica

  2024cites this paper
• Bacterial endophytome sources, profile and dynamics—a conceptual framework

  2024cites this paper
• Invisible Inhabitants of Plants and a Sustainable Planet: Diversity of Bacterial Endophytes and their Potential in Sustainable Agriculture

  2024cites this paper
• Community Diversity of Endophytic Bacteria in the Leaves and Roots of Pea Seedlings

  2024cites this paper
• Metataxonomic analysis of endophytic bacteria of blackberry (Rubus ulmifolius Schott) across tissues and environmental conditions

  2024cites this paper
• Endosymbiotic bacteria within the nematode-trapping fungus Arthrobotrys musiformis and their potential roles in nitrogen cycling

  2024cites this paper
• Insights into the Methodological, Biotic and Abiotic Factors Influencing the Characterization of Xylem-Inhabiting Microbial Communities of Olive Trees

  2023cites this paper
• Endophytic bacterial community structure and diversity of the medicinal plant Mirabilis himalaica from different locations

  2023cites this paper
• Community structure and niche differentiation of endosphere bacterial microbiome in Camellia oleifera

  2023cites this paper
• Harnessing the potential of endophytes: Sustainable solutions for enhancing forage crop resilience and soil fertility

  2023cites this paper
• New insights into the composition and diversity of endophytic bacteria in cultivated Huperzia serrata.

  2023cites this paper
• Insight into Andrographis paniculata associated bacterial endomicrobiome and assessment of culturable bacterial endophytes for enhancement of industrially important andrographolide content

  2023cites this paper
• Legacy Effects of Phytoremediation on Plant-Associated Prokaryotic Communities in Remediated Subarctic Soil Historically Contaminated with Petroleum Hydrocarbons

  2023cites this paper
• Effects of time-space conversion on microflora structure, secondary metabolites composition and antioxidant capacity of Codonopsis pilosula root.

  2023cites this paper
• The co-inoculation of Pseudomonas chlororaphis H1 and Bacillus altitudinis Y1 promoted soybean [Glycine max (L.) Merrill] growth and increased the relative abundance of beneficial microorganisms in rhizosphere and root

  2023cites this paper
• Diversity of endophytic bacteria of mulberry (Morus L.) under cold conditions

  2022cites this paper
• Changes of Endophytic Bacterial Community in Mature Leaves of Prunus laurocerasus L. during the Seasonal Transition from Winter Dormancy to Vegetative Growth

  2022cites this paper
• Niches and Seasonal Changes, Rather Than Transgenic Events, Affect the Microbial Community of Populus × euramericana ‘Neva’

  2022cites this paper
• Root endophytic bacterial community composition of Aconitum carmichaelii debx. from three main producing areas in China

  2022cites this paper
• Phylogenetic affiliation of endophytic actinobacteria associated with selected orchid species and their role in growth promotion and suppression of phytopathogens

  2022cites this paper
• Metagenomic study of the communities of bacterial endophytes in the desert plant Senna Italica and their role in abiotic stress resistance in the plant.

  2022cites this paper
• Seasonal Variation Imparts the Shift in Endophytic Bacterial Community Between Mango and its Hemiparasites

  2022cites this paper
• Bioprospecting and Challenges of Plant Microbiome Research for Sustainable Agriculture, a Review on Soybean Endophytic Bacteria

  2022cites this paper
• Assessing the Bacterial Communities Composition from Differently Treated Agarwood via 16S rRNA Gene Metabarcoding

  2022cites this paper
• Fungal isolates influence the quality of Peucedanum praeruptorum Dunn

  2022cites this paper
• Genotype and organ effect on the occupancy of phyllosphere prokaryotes in different rice landraces

  2022cites this paper
• Microbial community structure and niche differentiation under different health statuses of Pinus bungeana in the Xiong'an New Area in China

  2022cites this paper
• Effects of three regeneration methods on the growth and bacterial community diversity of Populus × euramericana

  2022cites this paper
• Microbial Community, Metabolic Potential and Seasonality of Endosphere Microbiota Associated with Leaves of the Bioenergy Tree Paulownia elongata × fortunei

  2022cites this paper
• Large-scale microbiome analysis reveals bacterial community characteristics in typical Chinese herbal slices

  2022cites this paper
• A Deeper Insight into the Phytoremediation of Soil Polluted with Petroleum Hydrocarbons Supported by the Enterobacter Ludwigii Zcr5 Strain

  2022cites this paper
• Diversity of the Bacterial Microbiome Associated With the Endosphere and Rhizosphere of Different Cassava (Manihot esculenta Crantz) Genotypes

  2021cites this paper
• Rhizosphere Biology: Interactions Between Microbes and Plants

  2021cites this paper
• Physiological and multigene characteristics of widely used tree and herbaceous peonies in response to field stress in Yanqing, Beijing, China

  2021cites this paper
• The root endophytic bacterial community of Ricinus communis L. resembles the seeds community more than the rhizosphere bacteria independent of soil water content

  2021cites this paper
• Beneficial Relationships Between Endophytic Bacteria and Medicinal Plants

  2021cites this paper
• Long‐term fertilisation regimes influence the diversity and community of wheat leaf bacterial endophytes

  2021cites this paper
• Shotgun metagenomics reveals the functional diversity of root-associated endophytic microbiomes in maize plant

  2021cites this paper
• Identification and Characterization of Arbutus unedo L. Endophytic Bacteria Isolated from Wild and Cultivated Trees for the Biological Control of Phytophthora cinnamomi

  2021cites this paper
• Bacterial community structure of the sunflower (Helianthus annuus) endosphere

  2021cites this paper
• First record of the endophytic bacteria of Deschampsia antarctica Ė. Desv. from two distant localities of the maritime Antarctic

  2021cites this paper
• Endophytic bacterial and fungal community compositions in different organs of ginseng (Panax ginseng)

  2021cites this paper
• Potensi Bakteri Endofit Asal Tanaman Pisang Klutuk (Musa balbisiana Colla) Sebagai Pendukung Pertumbuhan Tanaman

  2021cites this paper
• Diversity and Structure of the Endophytic Bacterial Communities Associated With Three Terrestrial Orchid Species as Revealed by 16S rRNA Gene Metabarcoding

  2020cites this paper
• A core seed endophytic bacterial community in the hyperaccumulator Noccaea caerulescens across 14 sites in France

  2020cites this paper
• Root-associated endophytic bacterial community composition and structure of three medicinal licorices and their changes with the growing year

  2020cites this paper
• Diversity of bacterial endophyte in Eucalyptus clones and their implications in water stress tolerance.

  2020cites this paper
• The invisible life inside plants: Deciphering the riddles of endophytic bacterial diversity.

  2020cites this paper
• Metagenomic profiling of the community structure, diversity, and nutrient pathways of bacterial endophytes in maize plant

  2020cites this paper
• Community structure and diversity of the microbiomes of two microhabitats at the root-soil interface: implications of meta-analysis of the root-zone soil and root endosphere microbial communities in Xiong'an New Area.

  2020cites this paper
• Niche Differentiation in the Composition, Predicted Function, and Co-occurrence Networks in Bacterial Communities Associated With Antarctic Vascular Plants

  2020cites this paper
• Endophytic bacterial and fungal microbiota in different cultivars of cassava (Manihot esculenta Crantz)

  2020cites this paper
• Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

  2020cites this paper
• Diversity Analysis of Endophytic Bacterial Microflora in Emilia sonchifolia (Linn.) DC on Illumina Mi Seq Platforms

  2020cites this paper
• Comparative study of the endophytic and rhizospheric bacterial diversity of Angelica sinensis in three main producing areas in Gansu, China

  2020cites this paper
• A core seed endophytic bacterial community in the hyperaccumulator Noccaea caerulescens across 14 sites in France

  2020cites this paper
• Response of rhizospheric and endophytic bacterial communities of white mustard (Sinapis alba) to bioaugmentation of soil with the Pseudomonas sp. H15 strain.

  2020cites this paper
• Culture-Dependent and Culture-Independent Characterization of the Olive Xylem Microbiota: Effect of Sap Extraction Methods

  2020cites this paper
• Diversity and the role of endophytic bacteria: A review

  2020cites this paper
• Bacterial Endophytes: Diversity, Functional Importance, and Potential for Manipulation

  2020cites this paper
• Endophytic Communities of Transgenic Poplar Were Determined by the Environment and Niche Rather Than by Transgenic Events

  2019cites this paper
• Gut Microbiota in Phytopharmacology: A Comprehensive Overview Of Concepts, Reciprocal Interactions, Biotransformations And Mode Of Actions.

  2019cites this paper
• First record of the endophytic bacteria of Deschampsia antarctica E. Desv. from two distant localities of the maritime Antarctica

  2019cites this paper
• Endophytic Bacterial Communities Associated with Roots and Leaves of Plants Growing in Chilean Extreme Environments

  2019cites this paper
• Endophytic Bacteria Associated with Medicinal Plants: The Treasure Trove of Antimicrobial Compounds

  2019cites this paper
• Characterization and comprehensive analysis of the ecological interaction networks of bacterial communities in Paullinia cupana var. sorbilis by 16S rRNA gene metabarcoding

  2019cites this paper
• Metagenomic study of endophytic bacterial community of sweet potato (Ipomoea batatas) cultivated in different soil and climatic conditions

  2019cites this paper
• Illumina-based Analysis of Endophytic Bacterial Diversity of four Allium species

  2019cites this paper
• Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands

  2019cites this paper
• Exploring Diversity of Bacterial Endophyte Communities Using Advanced Sequencing Technology

  2019cites this paper
• Comparison of specific endophytic bacterial communities in different developmental stages of Passiflora incarnata using culture‐dependent and culture‐independent analysis

  2019cites this paper
• A Microbiome Study Reveals Seasonal Variation in Endophytic Bacteria Among different Mulberry Cultivars

  2019cites this paper
• Metagenomic analysis of bacterial endophyte community structure and functions in Panax ginseng at different ages

  2019cites this paper
• Illumina sequencing and assessment of new cost-efficient protocol for metagenomic-DNA extraction from environmental water samples

  2018cites this paper
• Paeonia veitchii seeds as a promising high potential by-product: Proximate composition, phytochemical components, bioactivity evaluation and potential applications

  2018cites this paper
• 16S rRNA gene taxonomic profiling of endophytic bacteria associated with phylaenopsis roots

  2018cites this paper
• Bacteriome from Pinus arizonica and P. durangensis: Diversity, Comparison of Assemblages, and Overlapping Degree with the Gut Bacterial Community of a Bark Beetle That Kills Pines

  2018cites this paper
• Endophytic bacterial communities of Jingbai Pear trees in north China analyzed with Illumina sequencing of 16S rDNA

  2018cites this paper
• Fungal Endophytic Communities of Two Wild Rosa Varieties With Different Powdery Mildew Susceptibilities

  2018cites this paper
• Meta-analysis of root-associated microbial communities of widely distributed native and invasive Poaceae plants in Antarctic.

  year unknowncites this paper