Spatiotemporal Relationships Between the Abundance, Distribution, and Potential Activities of Ammonia-Oxidizing and Denitrifying Microorganisms in Intertidal Sediments

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Microbial Ecology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/s00248-014-0450-1PMID 25038845
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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• Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters

  2014cited by this paper
• Trait-Based Representation of Biological Nitrification: Model Development, Testing, and Predicted Community Composition

  2012cited by this paper
• Contrasting Seasonal and Fortnightly Variations in the Circulation of a Seasonally Inverse Estuary, Elkhorn Slough, California

  2012cited by this paper
• Impact of ocean acidification on benthic and water column ammonia oxidation

  2011cited by this paper
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  2011cited by this paper
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  2011cited by this paper
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  2010cited by this paper
• Denitrifier abundance and activity across the San Francisco Bay estuary.

  2010cited by this paper
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  2010cited by this paper
• Archaeal ammonia oxidizers and nirS-type denitrifiers dominate sediment nitrifying and denitrifying populations in a subtropical macrotidal estuary

  2010cited by this paper
• Global declines in oceanic nitrification rates as a consequence of ocean acidification

  2010cited by this paper
• Estuarine Nitrifiers: New Players, Patterns and Processes

  2010cited by this paper
• Distribution and Diversity of Archaeal and Bacterial Ammonia Oxidizers in Salt Marsh Sediments

  2009cited by this paper
• Discussion of “Uncertainty of excess density and settling velocity of mud derived from in situ measurements” by M. Fettweis [Estuarine Coastal & Shelf Science 78(2), June 2008. doi: 10.1016/j.ecss.2008.01.007]

  2009cited by this paper
• Lateral Circulation in Well-Mixed and Stratified Estuarine Flows with Curvature

  2009cited by this paper
• Temporal variability in the abundance of ammonia-oxidizing bacteria vs. archaea in sandy sediments of the Douro River estuary, Portugal

  2009cited by this paper
• Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

  2009cited by this paper
• Tidally regulated chemical fluxes across the sediment—water interface in Elkhorn Slough, California: Evidence from a coupled geochemical and hydrodynamic approach

  2009cited by this paper
• Genetic and Functional Variation in Denitrifier Populations along a Short-Term Restoration Chronosequence

  2008cited by this paper
• Archaea Dominate the Ammonia-Oxidizing Community in the Rhizosphere of the Freshwater Macrophyte Littorella uniflora

  2008cited by this paper
• Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California

  2008cited by this paper
• Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary.

  2008cited by this paper
• Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary.

  2008cited by this paper
• Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California

  2008cited by this paper
• Tidal and Nontidal Oscillations in Elkhorn Slough, CA

  2008influential reference
• High nutrient pulses, tidal mixing and biological response in a small California estuary: Variability in nutrient concentrations from decadal to hourly time scales

  2007influential reference
• Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient.

  2007cited by this paper
• Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia

  2007influential reference
• Diversity and Abundance of Nitrate Reductase Genes (narG and napA), Nitrite Reductase Genes (nirS and nrfA), and Their Transcripts in Estuarine Sediments

  2007cited by this paper
• Archaea predominate among ammonia-oxidizing prokaryotes in soils

  2006cited by this paper
• Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean.

  2005cited by this paper
• Nitrate sources and sinks in Elkhorn Slough, California: Results from long-term continuous in situ nitrate analyzers

  2004influential reference
• ARB: a software environment for sequence data.

  2004cited by this paper
• Quantification of denitrifying bacteria in soils by nirK gene targeted real-time PCR.

  2004cited by this paper
• Diversity of ammonia monooxygenase (amoA) genes across environmental gradients in Chesapeake Bay sediments

  2003cited by this paper
• Patterns and controls of nitrous oxide emissions from waters draining a subtropical agricultural valley

  2003cited by this paper
• Biogeochemical processes in a small California estuary. 2. Nitrification activity, community structure and role in nitrogen budgets

  2003cited by this paper
• Tidal flushing of ammonium from intertidal salt marsh sediments: the relative importance of adsorbed ammonium.

  2002cited by this paper
• Preface: Nutrient over-enrichment of the coastal zone

  2002cited by this paper
• Biogeochemical processes in a small California estuary. 1. Benthic fluxes and pore water constituents reflect high nutrient freshwater inputs

  2002cited by this paper
• Enhancement of coupled nitrification‐denitrification by benthic photosynthesis in shallow estuarine sediments

  2001cited by this paper
• Distribution and ecophysiology of the nitrifying bacteria emphasizing cultured species

  2001cited by this paper
• Diversity peaks at intermediate productivity in a laboratory microcosm

  2000cited by this paper
• Effect of Toxic Metals on Indigenous Soil β-Subgroup Proteobacterium Ammonia Oxidizer Community Structure and Protection against Toxicity by Inoculated Metal-Resistant Bacteria

  1999cited by this paper
• Effects of salinity on NH4+ adsorption capacity, nitrification, and denitrification in Danish estuarine sediments

  1999cited by this paper
• Development of PCR Primer Systems for Amplification of Nitrite Reductase Genes (nirK and nirS) To Detect Denitrifying Bacteria in Environmental Samples

  1998cited by this paper
• Rhythmic ammonium regeneration and flushing in intertidal sediments of the Sado estuary

  1998cited by this paper
• Cell biology and molecular basis of denitrification.

  1997cited by this paper
• The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations

  1997cited by this paper
• Seasonally Hypersaline Estuaries in Mediterranean-climate Regions

  1997cited by this paper
• Estimation of Nitrification and Denitrification from Microprofiles of Oxygen and Nitrate in Model Sediment Systems

  1994cited by this paper
• Determination of organic carbon and nitrogen in marine sediments using the Carlo Erba NA-1500 analyzer

  1990cited by this paper
• Eutrophication and the rate of denitrification and N20 production in coastal marine sediments

  1985cited by this paper
• The coupling of nitrification and denitrification in two estuarine sediments1,2

  1984cited by this paper
• Denitrification Rates in a Marine Sediment as Measured by the Acetylene Inhibition Technique

  1978cited by this paper
• Nitrogen, Phosphorus, and Eutrophication in the Coastal Marine Environment

  1971cited by this paper
• Estuarine , Coastal and Shelf Science

  year unknowncited by this paper

• Low-abundant but highly transcriptionally active uncharacterised Nitrosomonas drive ammonia-oxidation in the Brouage mudflat, France.

  2024cites this paper
• Benthic sediment nitrogen transformation processes in Arctic Kongsfjorden subject to glacier discharge

  2024cites this paper
• Denitrification in hypersaline and coastal environments

  2023cites this paper
• Ecological Observations Based on Functional Gene Sequencing Are Sensitive to the Amplicon Processing Method

  2022cites this paper
• Stochastic factors drive dynamics of ammonia-oxidizing archaeal and bacterial communities in aquaculture pond sediment

  2022cites this paper
• Ecological Distribution and Diversity of Key Functional Genes for Denitrification in Surface Sediments of the Northern South China Sea: Implications for Potential N2O Emissions

  2022cites this paper
• Long Term Influence of Fertility and Rotation on Soil Nitrification Potential and Nitrifier Communities

  2022cites this paper
• Vertical Distribution of Bacterial Community in Water Columns of Reservoirs With Different Trophic Conditions During Thermal Stratification

  2021cites this paper
• Distribution of Denitrification among Haloarchaea: A Comprehensive Study

  2021cites this paper
• Nitrogen-cycling gene pool shrunk by species interactions among denser bacterial and archaeal community stimulated by excess organic matter and total nitrogen in a eutrophic bay.

  2021cites this paper
• Nitrogen removal processes coupled with nitrification in coastal sediments off the north East China Sea

  2021cites this paper
• Distinct community composition and abundance of ammonia oxidizers in the high Arctic fjord sediments of Svalbard

  2021cites this paper
• Direct Detection of Denitrifying Bacteria in Groundwater by GeneFISH

  2020cites this paper
• Diversity and Abundance of Denitrifying Bacteria in the Sediment of a Eutrophic Estuary

  2020cites this paper
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  2020cites this paper
• Correlations of functional genes involved in methane, nitrogen and sulfur cycling in river sediments

  2020cites this paper
• Distribution Patterns of Microeukaryotic Community Between Sediment and Water of the Yellow River Estuary

  2020cites this paper
• Behavior of Radionuclides in the Environment I: Function of Particles in Aquatic System

  2020cites this paper
• Vegetation-Dependent Response to Drought in Salt Marsh Ammonia-Oxidizer Communities

  2019cites this paper
• Ecological Success of the Nitrosopumilus and Nitrosospira Clusters in the Intertidal Zone

  2019cites this paper
• Seasonal patterns and environmental drivers of nirS- and nirK-encoding denitrifiers in sediments of Daya Bay, China

  2019cites this paper
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  2019cites this paper
• Major Processes Shaping Mangroves as Inorganic Nitrogen Sources or Sinks: Insights From a Multidisciplinary Study

  2019cites this paper
• Response of chemical properties, microbial community structure and functional genes abundance to seasonal variations and human disturbance in Nanfei River sediments.

  2019cites this paper
• Processes and Microorganisms Involved in the Marine Nitrogen Cycle: Knowledge and Gaps

  2019cites this paper
• Distribution Patterns of nirS-Encoding and nirK-Encoding Denitrifiers in the Surface Sediment of the Pearl River Estuary

  2019cites this paper
• Environmental factors, but not abundance and diversity of nitrifying microorganisms, explain sediment nitrification rates in Yangtze lakes

  2018cites this paper
• The distribution of sediment and water column nitrification potential in the hyper-turbid Ems estuary

  2018cites this paper
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  2018cites this paper
• Quantitative responses of potential nitrification and denitrification rates to the size of microbial communities in rice paddy soils.

  2018cites this paper
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  2018cites this paper
• Bacterial and Archaeal Community Structure in the Surface Diatom Sediments of Deep Freshwater Lake Baikal (Eastern Siberia)

  2018cites this paper
• Microbial Nitrogen Cycling in Estuaries: From Genes to Ecosystem Processes

  2018influential citation
• Interactions between microorganisms and oxic-anoxic transitions

  2018cites this paper
• Diel Rhythm Does Not Shape the Vertical Distribution of Bacterial and Archaeal 16S rRNA Transcript Diversity in Intertidal Sediments: a Mesocosm Study

  2018cites this paper
• Primer selection influences abundance estimates of ammonia oxidizing archaea in coastal marine sediments.

  2018cites this paper
• Nitrogen removal and distribution of ammonia-oxidizing and denitrifying genes in an integrated constructed wetland for swine wastewater treatment

  2017cites this paper
• Salinity impact on ammonia oxidizers activity and amoA expression in estuarine sediments

  2017cites this paper
• Deep nirS amplicon sequencing of San Francisco Bay sediments enables prediction of geography and environmental conditions from denitrifying community composition

  2017cites this paper
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  2017cites this paper
• Distinct distribution patterns of proteobacterial nirK- and nirS-type denitrifiers in the Yellow River estuary, China.

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• Vertical profiles of water and sediment denitrifiers in two plateau freshwater lakes

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• Spatio-Temporal Variations in the Abundance and Structure of Denitrifier Communities in Sediments Differing in Nitrate Content.

  2017cites this paper
• Molecular microbial ecology of ammonia oxidation in coastal sediments

  2017influential citation
• Pathways regulating the removal of nitrogen in planted and unplanted subsurface flow constructed wetlands.

  2016cites this paper
• Spatiotemporal Characterization of San Francisco Bay Denitrifying Communities: a Comparison of nirK and nirS Diversity and Abundance

  2016influential citation
• Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia‐oxidizing microorganisms in the dark northeast Pacific Ocean

  2016cites this paper
• Organic Matter Loading Modifies the Microbial Community Responsible for Nitrogen Loss in Estuarine Sediments

  2015cites this paper
• Long-term impacts of disturbance on nitrogen-cycling bacteria in a New England salt marsh

  2015cites this paper
• Environmental drivers of the distribution of nitrogen functional genes at a watershed scale.

  2015cites this paper
• Organic matter loading modifies the microbial community responsible for nitrogen loss in 1 estuarine sediments 2 3 4

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• Benthic ammonia oxidizers differ in community structure and biogeochemical potential across a riverine delta

  2015cites this paper
• Unique diversity of the venom peptides from the scorpion Androctonus bicolor revealed by transcriptomic and proteomic analysis.

  2015cites this paper
• Connecting the dots: linking nitrogen cycle gene expression to nitrogen fluxes in marine sediment mesocosms

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  2014cites this paper
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  2014cites this paper
• MIT Open Access

  year unknowncites this paper