Metagenomic analysis shows diverse, distinct bacterial communities in biofilters among different marine recirculating aquaculture systems

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Aquaculture International

• Publication date

  2016-03-28

• Fields of study

  Biology, Environmental Science

• Identifiers
  DOI 10.1007/s10499-016-9997-9
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Microorganisms in recirculating aquaculture systems and their management

  2015cited by this paper
• Identification of Bacterial Community Composition in Freshwater Aquaculture System Farming of Litopenaeus vannamei Reveals Distinct Temperature-Driven Patterns

  2014cited by this paper
• C/N ratio-induced structural shift of bacterial communities inside lab-scale aquaculture biofilters

  2014influential reference
• Pyrosequencing analysis of bacterial communities in drinking water biofilters receiving influents of different types

  2013cited by this paper
• Molecular characterization of the nitrifying bacterial consortia employed for the activation of bioreactors used in brackish and marine aquaculture systems

  2013cited by this paper
• Prokaryotic successions and diversity in composts as revealed by 454-pyrosequencing.

  2013cited by this paper
• Diversity and heritability of the maize rhizosphere microbiome under field conditions

  2013influential reference
• Molecular Analysis of Bacterial Communities and Detection of Potential Pathogens in a Recirculating Aquaculture System for Scophthalmus maximus and Solea senegalensis

  2013cited by this paper
• Assessment of AquaMats for removing ammonia in intensive commercial Pacific white shrimp Litopenaeus vannamei aquaculture systems

  2013cited by this paper
• Performance and bacterial compositions of aged refuse reactors treating mature landfill leachate.

  2012cited by this paper
• Pyrosequencing reveals highly diverse microbial communities in microbial electrolysis cells involved in enhanced H2 production from waste activated sludge.

  2012cited by this paper
• Use of Probiotics in Aquaculture

  2012cited by this paper
• Characterization of nitrifying bacteria in marine recirculation aquaculture systems with regard to process optimization

  2012cited by this paper
• PCR-DGGE analysis of bacterial communities in bio-filtors of re-circulating mariculture system

  2011cited by this paper
• [Analysis of the changes of microbial community structure on bio-carrier of recirculating aquaculture systems (RAS)].

  2011influential reference
• Analysis of the bacterial community in a laboratory-scale nitrification reactor and a wastewater treatment plant by 454-pyrosequencing.

  2011cited by this paper
• A molecular and multivariate approach to the microbial community of a commercial shallow raceway marine recirculation system operating with a moving bed biofilter

  2011cited by this paper
• 454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

  2011cited by this paper
• An evaluation of commercially available biological filters for recirculating aquaculture systems

  2010cited by this paper
• QIIME allows analysis of high-throughput community sequencing data

  2010influential reference
• Microbial diversity of biological filters in recirculating aquaculture systems.

  2010cited by this paper
• Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent.

  2010cited by this paper
• Peracetic acid degradation and effects on nitrification in recirculating aquaculture systems.

  2009cited by this paper
• Effects of seawater ozonation on biofilm development in aquaculture tanks.

  2009cited by this paper
• Phylogenetic characterization of the heterotrophic bacterial communities inhabiting a marine recirculating aquaculture system

  2009influential reference
• Inventory, differentiation, and proportional diversity: a consistent terminology for quantifying species diversity

  2009cited by this paper
• Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates.

  2009cited by this paper
• Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

  2009cited by this paper
• Fluidized sand biofilters used to remove ammonia, biochemical oxygen demand, total coliform bacteria, and suspended solids from an intensive aquaculture effluent

  2008cited by this paper
• Importance of DNA quality in comparative soil microbial community structure analyses

  2008cited by this paper
• Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm.

  2008influential reference
• Probiotics in aquaculture: The need, principles and mechanisms of action and screening processes

  2008cited by this paper
• Pyrosequencing enumerates and contrasts soil microbial diversity

  2007cited by this paper
• Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes

  2007cited by this paper
• HRT and nutrients affect bacterial communities grown on recirculation aquaculture system effluents.

  2007cited by this paper
• Nitrifying bacterial communities in an aquaculture wastewater treatment system using fluorescence in situ hybridization (FISH), 16S rRNA gene cloning, and phylogenetic analysis.

  2007cited by this paper
• Nitrite-oxidizing bacteria, Nitrospira, distribution in the outer layer of the biofilm from filter materials of a recirculating water system for the goldfish Carassius auratus

  2007cited by this paper
• Nitrification kinetics of biofilm as affected by water quality factors

  2006influential reference
• Anaerobic Ammonium-Oxidizing (Anammox) Bacteria and Associated Activity in Fixed-Film Biofilters of a Marine Recirculating Aquaculture System

  2006cited by this paper
• Combined use of 16S ribosomal DNA and automated ribosomal intergenic spacer analysis to study the bacterial community in catfish ponds

  2006cited by this paper
• Phylogeny and Molecular Identification of Vibrios on the Basis of Multilocus Sequence Analysis

  2005cited by this paper
• Microbial communities associated with filter materials in recirculating aquaculture systems of freshwater fish

  2005cited by this paper
• Inactivation of bacteria using ultraviolet irradiation in a recirculating salmonid culture system

  2005cited by this paper
• Identification of Bacteria Potentially Responsible for Oxic and Anoxic Sulfide Oxidation in Biofilters of a Recirculating Mariculture System

  2005cited by this paper
• Ecology, Inhibitory Activity, and Morphogenesis of a Marine Antagonistic Bacterium Belonging to the Roseobacter Clade

  2005cited by this paper
• Sulfide-oxidizing activity and bacterial community structure in a fluidized bed reactor from a zero-discharge mariculture system.

  2005influential reference
• UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

  2005cited by this paper
• Handbook of Atmospheric Sciences Principles and Applications

  2004cited by this paper
• Identification of Bacterial Pathogens in Biofilms of Recirculating Aquaculture Systems

  2004cited by this paper
• Diversity of microbial communities correlated to physiochemical parameters in a digestion basin of a zero-discharge mariculture system.

  2003cited by this paper
• Characterization of the microbial community and nitrogen transformation processes associated with moving bed bioreactors in a closed recirculated mariculture system

  2003cited by this paper
• The Measurement of Diversity

  2001cited by this paper
• Populations of heterotrophic bacteria in an experimental recirculating aquaculture system

  2000cited by this paper
• An experimental study on nitrification biofilm performances using a series reactor system

  1999cited by this paper
• Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria

  1996cited by this paper
• Standard methods for the examination of water and wastewater : supplement to the sixteenth edition

  1988cited by this paper
• Nonparametric estimation of the number of classes in a population

  1984cited by this paper
• Phylogenetic structure of the prokaryotic domain: The primary kingdoms

  1977cited by this paper

• Bioflocs-assisted mass culture of Brachionus plicatilis under prolonged zero-water exchange and its application to Pagrus major larviculture

  2026cites this paper
• Microbial dynamics in water and biofilm following hydrogen peroxide addition to marine lab-scale RAS.

  2026cites this paper
• The Different Spatial Distribution Patterns of Nitrifying and Denitrifying Microbiome in the Biofilters of the Recirculating Aquaculture System

  2025cites this paper
• Importance of biofilms in water quality management in aquaculture systems—a review

  2025cites this paper
• Effects of Feeding Frequency on Turbot (Scophthalmus maximus) Performance, Water Quality and Microbial Community in Recirculating Aquaculture Systems

  2025cites this paper
• Assessing metal pollution in sea anemones: A global review

  2024cites this paper
• Bacterial Communities in Aquaponic Systems: Insights from Red Onion Hydroponics and Koi Biological Filters

  2024cites this paper
• Application of flow airlift fluidized bed (CAFB) - Aerobic denitrification bioreactor using polycaprolactone (PADR) as organic carbon source and biofilm carrier for synthetic marine aquaculture wastewater treatment

  2024cites this paper
• Diversity, community structure, and abundance of nirS-type denitrifying bacteria on suspended particulate matter in coastal high-altitude aquaculture pond water

  2024cites this paper
• Hazardous substances and their removal in recirculating aquaculture systems: A review

  2023cites this paper
• Abundance and Diversity of Nitrifying Microorganisms in Marine Recirculating Aquaculture Systems

  2022cites this paper
• Metagenomics and metabarcoding experimental choices and their impact on microbial community characterization in freshwater recirculating aquaculture systems

  2022cites this paper
• Effects of Bacillus sp. and Lactobacillus sp. combination as a water additive on the culture pond water and growth performance of hybrid grouper (Epinephelus fuscoguttatus × Epinephelus polyphekadion)

  2022cites this paper
• Impact of marine aquaculture wastewater discharge on microbial diversity in coastal waters

  2022cites this paper
• How a holobiome perspective could promote intensification, biosecurity and eco-efficiency in the shrimp aquaculture industry

  2022cites this paper
• Biofiltration treatment of wastewater through microbial ecology

  2022cites this paper
• Water quality, microbial community and shrimp growth performance of Litopenaeus vannamei culture systems based on biofloc or biofilters

  2021cites this paper
• Nitrification and denitrification in recirculating aquaculture systems: the processes and players

  2021cites this paper
• Microbial community dynamics in a hatchery recirculating aquaculture system (RAS) of sole (Solea senegalensis)

  2021cites this paper
• Molecular and culture-based assessment of the microbiome in a zebrafish (Danio rerio) housing system during set-up and equilibration

  2021cites this paper
• Dynamic and Assembly of Benthic Bacterial Community in an Industrial-Scale In-Pond Raceway Recirculating Culture System

  2021cites this paper
• From Farm to Fingers: an Exploration of Probiotics for Oysters, from Production to Human Consumption

  2020cites this paper
• Characteristics of Ammonia Removal and Nitrifying Microbial Communities in a Hybrid Biofloc-RAS for Intensive Litopenaeus vannamei Culture: A Pilot-Scale Study

  2020cites this paper
• Occurrence of Cyanobacteria and microcystins in hydroelectric reservoirs used for fish farming.

  2020cites this paper
• Characterization of the bacterial communities associated with biofilters in two full-scale recirculating aquaculture systems

  2020cites this paper
• Characterization of Bacterial Community, Ammonia-Oxidizing Bacteria, and Nitrospira During the Operation of a Commercial-Scale Recirculating Aquaculture System for Culturing Pufferfish Takifugu rubripes

  2020cites this paper
• Microbial community structure and nitrogen removal responses of an aerobic denitrification biofilm system exposed to tetracycline

  2020cites this paper
• Taxonomic and functional profiling of nitrifying biofilms in freshwater, brackish and marine RAS biofilters

  2020cites this paper
• Effects of Hydraulic Retention Time and Influent Nitrate-N Concentration on Nitrogen Removal and the Microbial Community of an Aerobic Denitrification Reactor Treating Recirculating Marine Aquaculture System Effluent

  2020influential citation
• Effects of carbon source addition on microbial community and water quality in recirculating aquaculture systems for Litopenaeus vannamei

  2020cites this paper
• Bacterial community analysis of marine recirculating aquaculture system bioreactors for complete nitrogen removal established from a commercial inoculum.

  2019influential citation
• Effects of water recirculation rate on the microbial community and water quality in relation to the growth and survival of white shrimp (Litopenaeus vannamei)

  2019cites this paper
• A New Isolate of Pediococcus pentosaceus (SL001) With Antibacterial Activity Against Fish Pathogens and Potency in Facilitating the Immunity and Growth Performance of Grass Carps

  2019cites this paper
• Predictive functional profiles using metagenomic 16S rRNA data: a novel approach to understanding the microbial ecology of aquaculture systems

  2019cites this paper
• Ammonia-oxidizing bacteria and archaea within biofilters of a commercial recirculating marine aquaculture system

  2018cites this paper