G-Quadruplex DNA Bound by a Synthetic Ligand is Highly Dynamic

Prakrit V. Jena,Pravin S. Shirude,Burak Okumuş,Katta Laxmi-Reddy,F. Godde,I. Huc,S. Balasubramanian,T. Ha

Published 2009 in Journal of the American Chemical Society

ABSTRACT

Using single molecule fluorescence resonance energy transfer, we investigated the interaction between a quadruplex-binding ligand and the human telomeric G-quadruplex. The binding of quinolinecarboxamide macrocycle to telomeric DNA was essentially irreversible and selectively induced and favored one quadruplex conformation. The ligand−quadruplex complex displayed intramolecular dynamics including quadruplex folding and unfolding in the absence of ligand association and dissociation. We report that the G-quadruplex can be stabilized without preventing the intrinsic intramolecular dynamics of telomeric DNA.

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