Deep Coalescence Reconciliation with Unrooted Gene Trees: Linear Time Algorithms

No abstract is available for this paper.

• Publication year

  2012

• Venue

  International Computing and Combinatorics Conference

• Publication date

  2012-08-20

• Fields of study

  Biology, Mathematics, Computer Science

• Identifiers
  DOI 10.1007/978-3-642-32241-9_45
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees.

  2011cited by this paper
• From Gene Trees to Species Trees II: Species Tree Inference by Minimizing Deep Coalescence Events

  2011cited by this paper
• Consequences of climate change on the tree of life in Europe

  2011cited by this paper
• Algorithms for MDC-Based Multi-Locus Phylogeny Inference: Beyond Rooted Binary Gene Trees on Single Alleles

  2011cited by this paper
• iGTP: A software package for large-scale gene tree parsimony analysis

  2010cited by this paper
• Sequence ― Evolution ― Function: Computational Approaches in Comparative Genomics

  2010cited by this paper
• Applying unmixing to gene expression data for tumor phylogeny inference

  2010cited by this paper
• Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models

  2010cited by this paper
• Estimating maximum likelihood phylogenies with PhyML.

  2009cited by this paper
• Phylogenetic patterns of species loss in Thoreau's woods are driven by climate change

  2008cited by this paper
• Phylogenetic trees and the future of mammalian biodiversity

  2008cited by this paper
• Inferring phylogeny from whole genomes

  2007influential reference
• Preserving the evolutionary potential of floras in biodiversity hotspots

  2007cited by this paper
• The relevance of phylogeny to studies of global change.

  2007cited by this paper
• DLS-trees: A model of evolutionary scenarios

  2006cited by this paper
• OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

  2005cited by this paper
• MUSCLE: multiple sequence alignment with high accuracy and high throughput.

  2004cited by this paper
• Database resources of the National Center for Biotechnology Information: update

  2004cited by this paper
• Molecular Evolution: A Phylogenetic Approach.—Roderic D. M. Page and Edward C. Holmes.

  2002cited by this paper
• The (Super)Tree of Life: Procedures, Problems, and Prospects

  2002cited by this paper
• The LCA Problem Revisited

  2000cited by this paper
• Gene Trees in Species Trees

  1997cited by this paper
• Regular ArticleRooting molecular trees: problems and strategies

  1994cited by this paper
• Rooting molecular trees: problems and strategies

  1994cited by this paper
• NUCLEIC ACID SEQUENCE PHYLOGENY AND RANDOM OUTGROUPS

  1990cited by this paper

• Phylogenetic network-assisted rooting of unrooted gene trees

  2024cites this paper
• Exact median-tree inference for unrooted reconciliation costs

  2020cites this paper
• Minimizing the deep coalescence cost

  2018cites this paper
• Unconstrained Diameters for Deep Coalescence

  2017cites this paper
• Phylogenetic Tree Reconciliation: Mean Values for Fixed Gene Trees

  2017cites this paper
• Mean Values of Gene Duplication and Loss Cost Functions

  2016cites this paper
• Gene Tree Diameter for Deep Coalescence

  2015cites this paper
• Unconstrained gene tree diameters for deep coalescence

  2014cites this paper
• Refining discordant gene trees

  2014cites this paper
• Maximizing Deep Coalescence Cost

  2014cites this paper
• Unrooted Tree Reconciliation: A Unified Approach

  2013cites this paper
• Algorithms for Unrooted Gene Trees with Polytomies

  2013cites this paper
• EasyChair Preprint No 636 Minimising the Deep Coalescence

  year unknowncites this paper