RETRACTED: Why proteins evolve at different rates: The functional hypothesis versus the mistranslation‐induced protein misfolding hypothesis

No abstract is available for this paper.

• Publication year

  2009

• Venue

  FEBS Letters

• Publication date

  2009-04-02

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/j.febslet.2009.02.033PMID 19254718
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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• Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution

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• Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

  2008influential reference
• Assessing the determinants of evolutionary rates in the presence of noise.

  2007cited by this paper
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  2006cited by this paper
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  2006cited by this paper
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  2006cited by this paper
• The quest for the universals of protein evolution.

  2006cited by this paper
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  2006cited by this paper
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  2005cited by this paper
• Why highly expressed proteins evolve slowly.

  2005influential reference
• Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks.

  2005cited by this paper
• Functional genomic analysis of the rates of protein evolution.

  2005cited by this paper
• Structure, function, and evolution of transient and obligate protein-protein interactions.

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• Genomic function: Rate of evolution and gene dispensability.

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  2002cited by this paper
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  2002cited by this paper
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  2002cited by this paper
• Protein dispensability and rate of evolution

  2001cited by this paper
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  2001cited by this paper
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  2001cited by this paper
• Over-expression of inducible HSP70 chaperone suppresses neuropathology and improves motor function in SCA1 mice.

  2001cited by this paper
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  2000cited by this paper
• Do essential genes evolve slowly?

  1999cited by this paper
• Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

  1994cited by this paper
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  1994cited by this paper
• Codon usage in bacteria: correlation with gene expressivity.

  1982cited by this paper
• Evolutionary processes and evolutionary noise at the molecular level

  1976cited by this paper
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  1963cited by this paper
• ¶ To whom correspondence should be addressed. E-mail:

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