The D1‐D2 region of the large subunit ribosomal DNA as barcode for ciliates

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Molecular Ecology Resources

• Publication date

  2014-05-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1111/1755-0998.12195PMID 24165195
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Extremely high copy numbers and polymorphisms of the rDNA operon estimated from single cell analysis of oligotrich and peritrich ciliates.

  2013cited by this paper
• Utility of genetic markers and morphology for species discrimination within the order Tintinnida (Ciliophora, Spirotrichea).

  2013influential reference
• Biological Identifications Through DNA Barcodes

  2012influential reference
• Identification of Paramecium bursaria syngens through molecular markers--comparative analysis of three loci in the nuclear and mitochondrial DNA.

  2012influential reference
• The Revised Classification of Eukaryotes

  2012cited by this paper
• The biology and ecology of tintinnid ciliates: models for marine plankton

  2012cited by this paper
• CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

  2012influential reference
• The International Nucleotide Sequence Database Collaboration

  2012cited by this paper
• Methods for DNA barcoding photosynthetic protists emphasizing the macroalgae and diatoms.

  2012cited by this paper
• Class Cariacotrichea, a novel ciliate taxon from the anoxic Cariaco Basin, Venezuela.

  2012cited by this paper
• The International Nucleotide Sequence Database Collaboration

  2011cited by this paper
• Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols

  2011cited by this paper
• Barcoding Tetrahymena: discriminating species and identifying unknowns using the cytochrome c oxidase subunit I (cox-1) barcode.

  2011influential reference
• Barcoding diatoms: exploring alternatives to COI-5P.

  2011cited by this paper
• Jaguc - a Software package for Environmental Diversity Analyses

  2011cited by this paper
• Genetic calibration of species diversity among North America's freshwater fishes

  2011cited by this paper
• No trivial pursuit

  2011cited by this paper
• The origin and early evolution of eukaryotes in the light of phylogenomics

  2010cited by this paper
• Short rDNA Barcodes for Species Identification in Foraminifera

  2010cited by this paper
• Barcoding of diatoms: nuclear encoded ITS revisited.

  2010cited by this paper
• The Ciliated Protozoa: Characterization, Classification, and Guide to the Literature

  2010influential reference
• Paramecium sexaurelia – IntraSpecific Polymorphism and Relationships with other Paramecium aurelia spp . , Revealed by Cytochrome b Sequence Data

  2010cited by this paper
• Assigning sequences to species in the absence of large interspecific differences.

  2010cited by this paper
• SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.

  2010cited by this paper
• The International Nucleotide Sequence Database Collaboration

  2010cited by this paper
• Comparative analysis of the mitochondrial cytochrome c oxidase subunit I (COI) gene in ciliates (Alveolata, Ciliophora) and evaluation of its suitability as a biodiversity marker

  2010cited by this paper
• Barcoding diatoms: Is there a good marker?

  2009cited by this paper
• Paramecium sexaurelia--intra-specific polymorphism and relationships with other Paramecium aurelia spp., revealed by cytochrome b sequence data.

  2009cited by this paper
• DNA barcode analysis: a comparison of phylogenetic and statistical classification methods

  2009cited by this paper
• A Survey of Polymerase Chain Reaction (PCR) Amplification Studies of Unicellular Protists Using Single‐Cell PCR

  2009cited by this paper
• High-Level Genetic Diversity but No Population Structure Inferred from Nuclear and Mitochondrial Markers of the Peritrichous Ciliate Carchesium polypinum in the Grand River Basin (North America)

  2009influential reference
• Comprar The Ciliated Protozoa · Characterization, Classification, and Guide to the Literature | Lynn, Denis H. | 9781402082382 | Springer

  2008influential reference
• “Missing” protists: a molecular prospective

  2008cited by this paper
• Improved Methodology for Identification of Protists and Microalgae from Plankton Samples Preserved in Lugol's Iodine Solution: Combining Microscopic Analysis with Single-Cell PCR

  2008cited by this paper
• DNA barcoding in surveys of small mammal communities: a field study in Suriname

  2008cited by this paper
• Trends in Taxonomy today: an overview about the main topics in Taxonomy

  2008cited by this paper
• Protist diversity and distribution: some basic considerations

  2008cited by this paper
• DNA barcodes and cryptic species of skipper butterflies in the genus Perichares in Area de Conservación Guanacaste, Costa Rica

  2008cited by this paper
• Diversity and geographic distribution of ciliates (Protista: Ciliophora)

  2008cited by this paper
• High mitochondrial haplotype diversity of Coleps sp. (Ciliophora: Prostomatida).

  2008cited by this paper
• Evidence for Local Ciliate Endemism in an Alpine Anoxic Lake

  2007cited by this paper
• Does the DNA barcoding gap exist? – a case study in blue butterflies (Lepidoptera: Lycaenidae)

  2007cited by this paper
• An evaluation of LSU rDNA D1-D2 sequences for their use in species identification

  2007influential reference
• Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena.

  2007influential reference
• Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case

  2007cited by this paper
• The “Tetrahymena pyriformis” complex of cryptic species

  2007cited by this paper
• Standard percent DNA sequence difference for insects does not predict species boundaries.

  2006cited by this paper
• Intraspecific Genetic Variation in Paramecium Revealed by Mitochondrial Cytochrome c Oxidase I Sequences

  2006cited by this paper
• DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success.

  2006cited by this paper
• Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

  2006cited by this paper
• Species of Tetrahymena Identical by Small Subunit rRNA Gene Sequences are Discriminated by Mitochondrial Cytochrome c Oxidase I Gene Sequences

  2006cited by this paper
• The promise of DNA barcoding for taxonomy.

  2005cited by this paper
• Use of DNA barcodes to identify flowering plants.

  2005cited by this paper
• DNA Barcoding: Error Rates Based on Comprehensive Sampling

  2005cited by this paper
• What can biological barcoding do for marine biology?

  2005cited by this paper
• MUSCLE: multiple sequence alignment with high accuracy and high throughput.

  2004influential reference
• Dramatic diversity of ciliate histone H4 genes revealed by comparisons of patterns of substitutions and paralog divergences among eukaryotes.

  2004cited by this paper
• The real 'kingdoms' of eukaryotes.

  2004cited by this paper
• Identification of Birds through DNA Barcodes

  2004influential reference
• Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species

  2003influential reference
• MacClade 4: analysis of phy-logeny and character evolution

  2003cited by this paper
• Biological identifications through DNA barcodes

  2003cited by this paper
• EVOLUTION OF DUPLICATED ALPHα‐TUBULIN GENES IN CILIATES

  2002cited by this paper
• Genome remodeling in ciliated protozoa.

  2002cited by this paper
• Biodiversity and Biocomplexity of the Protists and an Overview of Their Significant Roles in Maintenance of Our Biosphere

  2002influential reference
• The Diversity of Eukaryotes

  1999cited by this paper
• Basic light and scanning electron microscopic methods for taxonomic studies of ciliated protozoa.

  1991cited by this paper
• The Ecological Role of Water-Column Microbes in the Sea*

  1983cited by this paper
• Sex, Sex Inheritance and Sex Determination in Paramecium Aurelia.

  1937cited by this paper

• Speciation Caught in the Act: Derived Ciliary Patterns Budded Off From the Oxytricha granulifera‐Like Lineages (Alveolata, Ciliophora)

  2025cites this paper
• Insight into the diversity and phylogeny of the ciliate family Lynchellidae (Alveolata: Ciliophora), with the establishment of a new genus and two new species

  2025cites this paper
• The invasive land flatworm Arthurdendyus triangulatus has repeated sequences in the mitogenome, extra-long cox2 gene and paralogous nuclear rRNA clusters

  2024cites this paper
• Using digital PCR to predict ciliate abundance from ribosomal RNA gene copy numbers.

  2024cites this paper
• Community dynamics and co-occurrence relationships of pelagic ciliates and their potential prey at a coastal and an offshore station in the ultra-oligotrophic Eastern Mediterranean Sea

  2023cites this paper
• Sampling hidden microbial eukaryotic biodiversity in the tropics: new insights from the Paramecium aurelia complex (Ciliophora, Protozoa)

  2023cites this paper
• Polymorphisms of rDNA genes in Cyberlindnera yeast suggest birth and death evolution events.

  2023cites this paper
• Concepts towards Functional Eukaryotic Microbial Biogeography in the Ocean

  2022cites this paper
• Molecular Data Reveal a Cryptic Diversity in the Genus Urotricha (Alveolata, Ciliophora, Prostomatida), a Key Player in Freshwater Lakes, With Remarks on Morphology, Food Preferences, and Distribution

  2022cites this paper
• DNA barcoding, an effective tool for species identification: a review

  2022cites this paper
• Resolving cryptic species complexes in marine protists: phylogenetic haplotype networks meet global DNA metabarcoding datasets

  2021cites this paper
• Empirical evidence for concerted evolution in the 18S rDNA region of the planktonic diatom genus Chaetoceros

  2021cites this paper
• Transcriptome Profiling Revealed Multiple rquA Genes in the Species of Spirostomum (Protozoa: Ciliophora: Heterotrichea)

  2021cites this paper
• Empirical evidence for concerted evolution in the 18S rDNA region of the planktonic diatom genus Chaetoceros

  2021cites this paper
• Ecology of planktonic ciliates in a changing world: Concepts, methods, and challenges

  2021cites this paper
• Paramecium bursaria—A Complex of Five Cryptic Species: Mitochondrial DNA COI Haplotype Variation and Biogeographic Distribution

  2021cites this paper
• Description of Lepidochaetus tirjakovae sp. nov. (Gastrotricha: Paucitubulatina: Chaetonotidae), using morphology and DNA barcoding

  2021cites this paper
• Some morphologically distinguishable hypotrich ciliates share identical 18S rRNA gene sequences – taxonomic insights from a case study on Oxytricha species (Protista, Ciliophora)

  2021cites this paper
• Concatenated data and dense taxon sampling clarify phylogeny and ecological transitions within Hypotricha

  2020cites this paper
• Phylogenetics and phylogeography in the planktonic diatom genus Chaetoceros

  2019cites this paper
• Utility of mitochondrial CO1 sequences for species discrimination of Spirotrichea ciliates (Protozoa, Ciliophora)

  2019cites this paper
• Evaluation of the molecular variability and characteristics of Paramecium polycaryum and Paramecium nephridiatum, within subgenus Cypriostomum (Ciliophora, Protista).

  2019cites this paper
• Techniques and tools for species identification in ciliates: a review.

  2019cites this paper
• Further analyses of variation of ribosome DNA copy number and polymorphism in ciliates provide insights relevant to studies of both molecular ecology and phylogeny

  2019cites this paper
• A study on the non-monophyletic genera Australothrix and Holostichides based on multigene and morphological analyses with a reexamination of type materials (Protozoa: Ciliophora).

  2019cites this paper
• Diversity of oligotrich ciliates (Ciliophora, Spirotrichea) in the northern coast of South China Sea as revealed in LSU rDNA sequences

  2019cites this paper
• Global molecular variation of Paramecium jenningsi complex (Ciliophora, Protista): a starting point for further, detailed biogeography surveys

  2019cites this paper
• Ciliate Environmental Diversity Can Be Underestimated by the V4 Region of SSU rDNA: Insights from Species Delimitation and Multilocus Phylogeny of Pseudokeronopsis (Protist, Ciliophora)

  2019influential citation
• Deciphering phylogenetic relationships and delimiting species boundaries using a Bayesian coalescent approach in protists: A case study of the ciliate genus Spirostomum (Ciliophora, Heterotrichea)

  2019cites this paper
• Molecular Characterization of Two Marine Tintinnids(Ciliophora, Spirotrichea, Tintinnidae) Using Six Genes

  2019influential citation
• Identification of indicator ciliates (Ciliophora, Alveolata) in water quality assessment: an integrative approach / Anna Binder B.Sc.

  2019influential citation
• Towards an eDNA metabarcode-based performance indicator for full-scale municipal wastewater treatment plants.

  2018cites this paper
• Worldwide sampling reveals low genetic variability in populations of the freshwater ciliate Paramecium biaurelia (P. aurelia species complex, Ciliophora, Protozoa)

  2018cites this paper
• A Contribution to the Morphology and Phylogeny of Chlamydodon, with Three New Species from China (Ciliophora, Cyrtophoria)

  2018cites this paper
• Species delimitation for the molecular taxonomy and ecology of the widely distributed microbial eukaryote genus Euplotes (Alveolata, Ciliophora)

  2018cites this paper
• Novel insights into the genetic diversity of Parafavella based on mitochondrial CO1 sequences

  2018cites this paper
• Metabarcoding of benthic ciliate communities shows high potential for environmental monitoring in salmon aquaculture

  2018cites this paper
• A Comparison of Different Ciliate Metabarcode Genes as Bioindicators for Environmental Impact Assessments of Salmon Aquaculture

  2018cites this paper
• Morphology, morphogenesis, and molecular phylogeny of Pleurotricha oligocirrata nov. spec. (Ciliophora: Spirotrichea: Stylonychinae).

  2017cites this paper
• Genetic diversity in chrysophytes: Comparison of different gene markers

  2017cites this paper
• Taxonomic sufficiency in detecting hydrological changes and reproducing ordination patterns: A test using planktonic ciliates

  2017cites this paper
• Beyond the “Code”: A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora)

  2017cites this paper
• Three rDNA Loci‐Based Phylogenies of Tintinnid Ciliates (Ciliophora, Spirotrichea, Choreotrichida)

  2017cites this paper
• Expanded phylogenetic analyses of the class Heterotrichea (Ciliophora, Postciliodesmatophora) using five molecular markers and morphological data.

  2016cites this paper
• Utility of combining morphological characters, nuclear and mitochondrial genes: An attempt to resolve the conflicts of species identification for ciliated protists.

  2016cites this paper
• Morphology of four cyrtophorian ciliates (Protozoa, Ciliophora) from Yangtze Delta, China, with notes on the phylogeny of the genus Phascolodon.

  2016cites this paper
• Biogeography and Character Evolution of the Ciliate Genus Euplotes (Spirotrichea, Euplotia), with Description of Euplotes curdsi sp. nov.

  2016cites this paper
• Paramecium jenningsi complex: existence of three cryptic species confirmed by multi-locus analysis and strain crosses

  2016cites this paper
• The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates

  2016cites this paper
• On molecular biology of ciliated protozoa:Frontier areas and progresses

  2016cites this paper
• New Stands of Species of the Paramecium aurelia Complex ; is the Occurrence of Particular Species Limited by Temperature Barriers ?

  2015cites this paper
• Discrimination of closely related species in tintinnid ciliates: new insights on crypticity and polymorphism in the genus Helicostomella.

  2015cites this paper
• Delimiting Species Boundaries within a Paraphyletic Species Complex: Insights from Morphological, Genetic, and Molecular Data on Paramecium sonneborni (Paramecium aurelia species complex, Ciliophora, Protozoa).

  2015cites this paper
• New Stands of Species of the Paramecium aurelia Complex; is the Occurrence of Particular Species Limited by Temperature Barriers?

  2015cites this paper
• Morphological and genetic analysis of the Coolia monotis species complex with the introduction of two new species, Coolia santacroce sp. nov. and Coolia palmyrensis sp. nov. (Dinophyceae)

  2015cites this paper
• Wide occurrence of SSU rDNA intragenomic polymorphism in foraminifera and its implications for molecular species identification.

  2014cites this paper