Response of soil, leaf endosphere and phyllosphere bacterial communities to elevated CO2 and soil temperature in a rice paddy

No abstract is available for this paper.

• Publication year

  2015

• Venue

  Plant and Soil

• Publication date

  2015-05-16

• Fields of study

  Biology, Environmental Science

• Identifiers
  DOI 10.1007/s11104-015-2503-8
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

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• Analysis of endophytic bacterial communities of potato by plating and denaturing gradient gel electrophoresis (DGGE) of 16S rDNA based PCR fragments

  2001influential reference
• Evaluation of bacteria isolated from rice for plant growth promotion and biological control of seedling disease of rice.

  2001cited by this paper
• Endophytic Colonization of Rice by a Diazotrophic Strain of Serratia marcescens

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  2000cited by this paper
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• Temporal fluctuations in the pseudomonad population associated with sugar beet leaves

  1999cited by this paper
• Microclimatic parameters influencing nitrogen fixation in the phyllosphere in a Costa Rican premontane rain forest

  1998cited by this paper
• Biodiversity and stability in grasslands

  1996cited by this paper
• Biodiversity and ecosystem stability

  1995cited by this paper
• Plant responses to atmospheric CO2 enrichment in the face of environmental constraints: a review of the past 10 years' research

  1994cited by this paper

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• Plant-microbiome interactions and their impacts on plant adaptation to climate change.

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• Modelling the distribution of plant‐associated microbes with species distribution models

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• Dynamics of rice microbiome: insights into functional diversity, environmental influences, response to stress, and applications

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• Epiphytic and endophytic bacteria on Camellia oleifera phyllosphere: exploring region and cultivar effect

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  2022cites this paper
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  2022cites this paper
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  2022cites this paper
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  2022cites this paper
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  2017cites this paper
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  2016cites this paper
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  2016cites this paper
• Microbial ecology associated to soil-plant interactions: exemplifying recent progress in East Asia

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