Sequencing and comparative analysis of IncP-1α antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions.

No abstract is available for this paper.

• Publication year

  2011

• Venue

  Journal of Biotechnology

• Publication date

  2011-08-20

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/j.jbiotec.2010.11.018PMID 21115076
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Comparative genomics of pAKD4, the prototype IncP-1delta plasmid with a complete backbone.

  2010cited by this paper
• Antimicrobial Resistance-Conferring Plasmids with Similarity to Virulence Plasmids from Avian Pathogenic Escherichia coli Strains in Salmonella enterica Serovar Kentucky Isolates from Poultry

  2009cited by this paper
• PGA4genomics for comparative genome assembly based on genetic algorithm optimization.

  2009cited by this paper
• EDGAR: A software framework for the comparative analysis of prokaryotic genomes

  2009cited by this paper
• MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

  2008cited by this paper
• A spontaneous direct repeat deletion in the pGEX fusion vector decreases the expression level of recombinant proteins in Escherichia coli.

  2008cited by this paper
• Sequence of plasmid pBS228 and reconstruction of the IncP-1α phylogeny

  2007cited by this paper
• The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups.

  2007cited by this paper
• Sequence of plasmid pBS228 and reconstruction of the IncP-1alpha phylogeny.

  2007cited by this paper
• Clustal W and Clustal X version 2.0

  2007cited by this paper
• Nucleotide Sequence of Plasmid pCNB1 from Comamonas Strain CNB-1 Reveals Novel Genetic Organization and Evolution for 4-Chloronitrobenzene Degradation

  2007cited by this paper
• Increased Abundance of IncP-1β Plasmids and Mercury Resistance Genes in Mercury-Polluted River Sediments: First Discovery of IncP-1β Plasmids with a Complex mer Transposon as the Sole Accessory Element

  2006cited by this paper
• Plasmid pBP136 from Bordetella pertussis represents an ancestral form of IncP-1beta plasmids without accessory mobile elements.

  2006cited by this paper
• M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

  2006cited by this paper
• Plasmids from freshwater environments capable of IncQ retrotransfer are diverse and include pQKH54, a new IncP-1 subgroup archetype.

  2006cited by this paper
• Sequence and analysis of the 46.6-kb plasmid pA1 from Sphingomonas sp. A1 that corresponds to the typical IncP-1beta plasmid backbone without any accessory gene.

  2006cited by this paper
• Mobile genetic elements: the agents of open source evolution

  2005cited by this paper
• Genome sequencing in microfabricated high-density picolitre reactors

  2005cited by this paper
• Plasmid pB8 is closely related to the prototype IncP-1beta plasmid R751 but transfers poorly to Escherichia coli and carries a new transposon encoding a small multidrug resistance efflux protein.

  2005cited by this paper
• Sequence of the 68,869 bp IncP-1alpha plasmid pTB11 from a waste-water treatment plant reveals a highly conserved backbone, a Tn402-like integron and other transposable elements.

  2005cited by this paper
• Mechanisms of, and Barriers to, Horizontal Gene Transfer between Bacteria

  2005cited by this paper
• The 120 592 bp IncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different antibiotic-resistance determinants, two iron-acquisition systems and other putative virulence-associated functions.

  2005cited by this paper
• Nosocomial bacterial infections in Intensive Care Units. I: Organisms and mechanisms of antibiotic resistance

  2005cited by this paper
• European Status of Resistance in Nosocomial Infections

  2005cited by this paper
• Chlorocatechol catabolic enzymes from Achromobacter xylosoxidans A8

  2004cited by this paper
• The Completely Sequenced Plasmid pEST4011 Contains a Novel IncP1 Backbone and a Catabolic Transposon Harboring tfd Genes for 2,4-Dichlorophenoxyacetic Acid Degradation

  2004cited by this paper
• Prospects for inferring very large phylogenies by using the neighbor-joining method.

  2004cited by this paper
• Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system.

  2004cited by this paper
• Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways.

  2004cited by this paper
• The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1beta group without any accessory genes.

  2004cited by this paper
• Complete Nucleotide Sequence of the Conjugative Tetracycline Resistance Plasmid pFBAOT6, a Member of a Group of IncU Plasmids with Global Ubiquity

  2004cited by this paper
• Structure of Haloacetate-Catabolic IncP-1β Plasmid pUO1 and Genetic Mobility of Its Residing Haloacetate-Catabolic Transposon

  2003cited by this paper
• GenDB--an open source genome annotation system for prokaryote genomes.

  2003cited by this paper
• The 79,370-bp conjugative plasmid pB4 consists of an IncP-1β backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene blaNPS-1, and a tripartite antibiotic efflux system of the resistance-nodulation-division family

  2003cited by this paper
• The 64 508 bp IncP-1beta antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1beta group.

  2003cited by this paper
• Occurrence of integron-associated resistance gene cassettes located on antibiotic resistance plasmids isolated from a wastewater treatment plant.

  2003cited by this paper
• Complete characterisation of Tn5530 from Burkholderia cepacia strain 2a (pIJB1) and studies of 2,4-dichlorophenoxyacetate uptake by the organism.

  2002cited by this paper
• Characterization and Movement of the Class 1 Integron Known as Tn2521 and Tn1405

  2002cited by this paper
• Complete Nucleotide Sequence and Organization of the Atrazine Catabolic Plasmid pADP-1 from Pseudomonassp. Strain ADP

  2001cited by this paper
• Molecular Cloning: A Laboratory Manual

  2001cited by this paper
• Paradigms of plasmid organization

  2000cited by this paper
• EMBOSS: the European Molecular Biology Open Software Suite.

  2000cited by this paper
• Phenotypic and molecular characterization of conjugative antibiotic resistance plasmids isolated from bacterial communities of activated sludge

  2000cited by this paper
• Horizontal Gene Pool: Bacterial Plasmids and Gene Spread

  2000cited by this paper
• A novel plasmid pIJB1 possessing a putative 2,4-dichlorophenoxyacetate degradative transposon Tn5530 in Burkholderia cepacia strain 2a.

  1998cited by this paper
• Complete sequence of the IncPbeta plasmid R751: implications for evolution and organisation of the IncP backbone.

  1998cited by this paper
• Detection and characterization of broad-host-range plasmids in environmental bacteria by PCR

  1996cited by this paper
• Molecular analysis of the replication elements of the broad-host-range RepA/C replicon.

  1996cited by this paper
• Complete nucleotide sequence of Birmingham IncP alpha plasmids. Compilation and comparative analysis.

  1994cited by this paper
• Complete Nucleotide Sequence of Birmingham IncPα Plasmids: Compilation and Comparative Analysis

  1994cited by this paper
• Tn5053, a mercury resistance transposon with integron's ends.

  1993cited by this paper
• Trans-kingdom promiscuity

  1990cited by this paper
• Incompatibility group P plasmids: genetics, evolution, and use in genetic manipulation.

  1987cited by this paper
• Plasmid transfer by conjugation from Escherichia coli to Gram‐positive bacteria

  1987cited by this paper
• Homologous recombination in Escherichia coli: dependence on substrate length and homology.

  1986cited by this paper
• The development of plasmid-free strains of Agrobacterium tumefaciens by using incompatibility with a Rhizobium meliloti plasmid to eliminate pAtC58.

  1985cited by this paper
• On the formation of spontaneous deletions: the importance of short sequence homologies in the generation of large deletions.

  1982cited by this paper
• R-Factors used for genetic studies in strains of Pseudomonas aeruginosa and their origin

  1973cited by this paper

• Insights from public database sequences related to the replication initiation protein TrfA of the IncP-1 plasmid RK2.

  2025cites this paper
• Birmingham-group IncP-1α plasmids revisited: RP4, RP1 and RK2 are identical and their remnants can be detected in environmental isolates

  2025cites this paper
• Beyond horizontal gene transfer: the role of plasmids in bacterial evolution

  2021cites this paper
• Tn6603, a Carrier of Tn5053 Family Transposons, Occurs in the Chromosome and in a Genomic Island of Pseudomonas aeruginosa Clinical Strains

  2020cites this paper
• Analysis of Virulence Factors and Antimicrobial Resistance in Salmonella Using Molecular Techniques and Identification of Clonal Relationships Among the Strains

  2018cites this paper
• The Design and Implementation of Genomics Tools for Enhanced Detection and Characterization of Verotoxigenic Escherichia coli Implicated in Foodborne Illness

  2017cites this paper
• Genomic Tools for Customized Recovery and Detection of Foodborne Shiga Toxigenic Escherichia coli.

  2016cites this paper
• Microbial Genomics and Bioremediation of Industrial Wastewater

  2016cites this paper
• Identification of novel toluene monooxygenase genes in a hydrocarbon-polluted sediment using sequence- and function-based screening of metagenomic libraries

  2016cites this paper
• Characterization of the genetic environment of blaESBL genes, integrons and toxin-antitoxin systems identified on large transferrable plasmids in multi-drug resistant Escherichia coli

  2015cites this paper
• Environmentally co‐occurring mercury resistance plasmids are genetically and phenotypically diverse and confer variable context‐dependent fitness effects

  2015cites this paper
• Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library.

  2014cites this paper
• IncH-Type Plasmid Harboring blaCTX-M-15, blaDHA-1, and qnrB4 Genes Recovered from Animal Isolates

  2014cites this paper
• Broad-host-range IncP-1 plasmids and their resistance

  2013cites this paper
• Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344.

  2013influential citation
• An anion-exchange method to concentrate dissolved DNA from aquifer water.

  2013cites this paper
• Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.

  2013cites this paper
• Broad-host-range IncP-1 plasmids and their resistance potential

  2013cites this paper
• Environmental and Public Health Implications of Water Reuse: Antibiotics, Antibiotic Resistant Bacteria, and Antibiotic Resistance Genes

  2013cites this paper
• The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant's on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates.

  2013cites this paper
• IncP-1β plasmids of Comamonas sp. and Delftia sp. strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet.

  2012cites this paper
• Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage.

  2012cites this paper
• The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution.

  2012cites this paper