Can Codon Usage Bias Explain Intron Phase Distributions and Exon Symmetry?

No abstract is available for this paper.

• Publication year

  2004

• Venue

  Journal of Molecular Evolution

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1007/s00239-004-0032-9PMID 15696372
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2001cited by this paper
• Testing the "proto-splice sites" model of intron origin: evidence from analysis of intron phase correlations.

  2000influential reference
• EID: the Exon?Intron Database?an exhaustive database of protein-coding intron-containing genes

  2000influential reference
• Association of intron phases with conservation at splice site sequences and evolution of spliceosomal introns.

  1999cited by this paper
• Relationship between "proto-splice sites" and intron phases: evidence from dicodon analysis.

  1998cited by this paper
• Origin of genes.

  1997cited by this paper
• DNA Composition, Codon Usage and Exon Prediction

  1997cited by this paper
• Prediction of probable genes by Fourier analysis of genomic sequences

  1997cited by this paper
• [Statistics of periodic regularities in sequences of human introns].

  1996cited by this paper
• Intron phase correlations and the evolution of the intron/exon structure of genes.

  1995cited by this paper
• Analysis of nonuniformity in intron phase distribution.

  1992cited by this paper
• Periodicity in DNA coding sequences: implications in gene evolution.

  1991cited by this paper
• Periodicities in coding and noncoding regions of the genes.

  1990cited by this paper
• Evidence that introns arose at proto‐splice sites.

  1989cited by this paper
• Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16 S rRNA nucleotide sequences.

  1987cited by this paper
• Periodicity in DNA primary structure is defined by secondary structure of the coded protein.

  1981cited by this paper
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  1981cited by this paper

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