Bioinformatic analysis of the link between gene composition and expressivity in Saccharomyces cerevisiae and Schizosaccharomyces pombe

No abstract is available for this paper.

• Publication year

  2004

• Venue

  Antonie van Leeuwenhoek

• Publication date

  2004-08-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1023/B:ANTO.0000036119.00001.3bPMID 15280647
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2001cited by this paper
• Codon bias at the 3'-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli.

  2001cited by this paper
• Impact of the six nucleotides downstream of the stop codon on translation termination

  2001cited by this paper
• Cooperative effects by the initiation codon and its flanking regions on translation initiation.

  2001cited by this paper
• Gene expression and molecular evolution.

  2001cited by this paper
• Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate.

  2000cited by this paper
• Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae

  2000cited by this paper
• Increasing expression of P450 and P450-reductase proteins from monocots in heterologous systems.

  2000cited by this paper
• Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

  1999cited by this paper
• Initiation of translation in prokaryotes and eukaryotes.

  1999cited by this paper
• Selection at the wobble position of codons read by the same tRNA in Saccharomyces cerevisiae.

  1999cited by this paper
• The influence of 5' codon context on translation termination in Saccharomyces cerevisiae.

  1998cited by this paper
• An Evaluation of Measures of Synonymous Codon Usage Bias

  1998cited by this paper
• Specific replacement of consecutive AGG codons results in high-level expression of human cardiac troponin T in Escherichia coli.

  1996cited by this paper
• The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences in Saccharomyces cerevisiae.

  1995cited by this paper
• Human interferon-beta, expressed in Saccharomyces cerevisiae, is predominantly directed to the vacuoles. Influence of modified co-expression of secretion factors and chaperones.

  1994cited by this paper
• Influence of the three nucleotides upstream of the initiation codon on expression of the Escherichia coli lacZ gene in Saccharomyces cerevisiae.

  1993cited by this paper
• Influence of the codon following the initiation codon on the expression of the lacZ gene in Saccharomyces cerevisiae

  1991cited by this paper
• Quantitation of readthrough of termination codons in yeast using a novel gene fusion assay

  1991cited by this paper
• mRNA leader length and initiation codon context determine alternative AUG selection for the yeast gene MOD5.

  1991cited by this paper
• The 'effective number of codons' used in a gene.

  1990cited by this paper
• Synthesis of a gene for human serum albumin and its expression in Saccharomyces cerevisiae.

  1990cited by this paper
• Codon usage and intragenic position.

  1988influential reference
• Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity.

  1988cited by this paper
• Selective differences among translation termination codons.

  1988cited by this paper
• Coevolution of codon usage and transfer RNA abundance

  1987cited by this paper
• Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases.

  1987cited by this paper
• The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

  1987cited by this paper
• Secretion of human insulin by a transformed yeast cell

  1987cited by this paper
• Translation rate modification by preferential codon usage: intragenic position effects.

  1987cited by this paper
• Expression of a synthetic human growth hormone gene in yeast

  1985cited by this paper
• Codon usage and tRNA content in unicellular and multicellular organisms.

  1985cited by this paper
• Expression of a synthetic human growth hormone gene in yeast.

  1985cited by this paper
• Codon usage and transfer RNA contents: organism-specific codon-choice patterns in reference to the isoacceptor contents.

  1983cited by this paper
• Codon usage in bacteria: correlation with gene expressivity.

  1982cited by this paper
• Some Methods for Strengthening the Common χ 2 Tests

  1954cited by this paper

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  2016cites this paper
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  2012cites this paper
• Measuring codon usage bias

  2012cites this paper
• Follow the Leader: Preference for Specific Amino Acids Directly Following the Initial Methionine in Proteins of Different Organisms

  2010cites this paper
• Linear covariance models to examine the determinants of protein levels in Lactococcus lactis.

  2010cites this paper
• AGE TATS Sequence motifs influencing the efficiency of translation

  2009cites this paper
• Produktion und Freisetzung von L-Glycerol-3-Phosphat (L-G3P) mit genetisch modifizierten Stämmen von Saccharomyces cerevisiae

  2008cites this paper
• SCUMBLE: a method for systematic and accurate detection of codon usage bias by maximum likelihood estimation

  2008cites this paper
• Engineering Saccharomyces ceresisiae for the Secretion of an Extracellular Lipase

  2007cites this paper
• The effects of differential gene expression on coding sequence features: analysis by one-way ANOVA.

  2007cites this paper
• Highly expressed proteins have an increased frequency of alanine in the second amino acid position

  2006cites this paper
• A cytosine-rich region upstream of start codons serving as a signal for initiation of translation in Encephalitozoon cuniculi?

  2005cites this paper
• INTROnSPECTIVE and NORA: computerized compositional characterization of regions within introns and around start codons on the basis of non-randomness analysis.

  2005cites this paper
• Current awareness on yeast

  2005cites this paper