Transcriptomic variation among six Arabidopsis thaliana accessions identified several novel genes controlling aluminium tolerance.

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Plant, Cell and Environment

• Publication date

  2017-02-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/pce.12866PMID 27861992
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Distant eQTLs and Non-coding Sequences Play Critical Roles in Regulating Gene Expression and Quantitative Trait Variation in Maize.

  2017cited by this paper
• Joint genetic and network analyses identify loci associated with root growth under NaCl stress in Arabidopsis thaliana.

  2016cited by this paper
• Transcriptomes of Eight Arabidopsis thaliana Accessions Reveal Core Conserved, Genotype- and Organ-Specific Responses to Flooding Stress1[OPEN]

  2016cited by this paper
• 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana

  2016cited by this paper
• A Dengue Vaccine.

  2016cited by this paper
• RNA-Seq analysis identifies genes associated with differential reproductive success under drought-stress in accessions of wild barley Hordeum spontaneum

  2015cited by this paper
• Aluminum-Dependent Terminal Differentiation of the Arabidopsis Root Tip Is Mediated through an ATR-, ALT2-, and SOG1-Regulated Transcriptional Response[OPEN]

  2015cited by this paper
• SENSITIVE TO PROTON RHIZOTOXICITY1, CALMODULIN BINDING TRANSCRIPTION ACTIVATOR2, and Other Transcription Factors Are Involved in ALUMINUM-ACTIVATED MALATE TRANSPORTER1 Expression1[OPEN]

  2015cited by this paper
• Identification of the Primary Lesion of Toxic Aluminum in Plant Roots1[OPEN]

  2015cited by this paper
• ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression

  2015cited by this paper
• Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

  2014cited by this paper
• Molecular mechanisms of Al tolerance in gramineous plants

  2014cited by this paper
• Natural variation underlies alterations in Nramp aluminum transporter (NRAT1) expression and function that play a key role in rice aluminum tolerance

  2014cited by this paper
• STOP2 activates transcription of several genes for Al- and low pH-tolerance that are regulated by STOP1 in Arabidopsis.

  2014cited by this paper
• HTSeq—a Python framework to work with high-throughput sequencing data

  2014cited by this paper
• Overexpression of a Soybean Ariadne-Like Ubiquitin Ligase Gene GmARI1 Enhances Aluminum Tolerance in Arabidopsis

  2014cited by this paper
• Aluminum tolerance in maize is associated with higher MATE1 gene copy number

  2013cited by this paper
• WRKY46 functions as a transcriptional repressor of ALMT1, regulating aluminum-induced malate secretion in Arabidopsis.

  2013cited by this paper
• Characterization of the Complex Regulation of AtALMT1 Expression in Response to Phytohormones and Other Inducers1[W][OA]

  2013cited by this paper
• TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

  2013cited by this paper
• RNA sequencing reveals the complex regulatory network in the maize kernel

  2013cited by this paper
• Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants

  2012cited by this paper
• Quality control and preprocessing of metagenomic datasets

  2011cited by this paper
• A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

  2011cited by this paper
• Multiple reference genomes and transcriptomes for Arabidopsis thaliana

  2011cited by this paper
• The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

  2011cited by this paper
• Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana

  2011cited by this paper
• Integrative Genomics Viewer

  2011cited by this paper
• Expression level polymorphisms: heritable traits shaping natural variation.

  2011cited by this paper
• bZIP28 and NF-Y Transcription Factors Are Activated by ER Stress and Assemble into a Transcriptional Complex to Regulate Stress Response Genes in Arabidopsis[W][OA]

  2010cited by this paper
• Diversification and Specialization of Plant RBR Ubiquitin Ligases

  2010cited by this paper
• Natural Variation of Transcriptional Auxin Response Networks in Arabidopsis thaliana[C][W][OA]

  2010cited by this paper
• Transcriptome responses to aluminum stress in roots of aspen (Populus tremula)

  2010cited by this paper
• agriGO: a GO analysis toolkit for the agricultural community

  2010cited by this paper
• TagDust—a program to eliminate artifacts from next generation sequencing data

  2009cited by this paper
• STOP1 Regulates Multiple Genes That Protect Arabidopsis from Proton and Aluminum Toxicities1[C][W][OA]

  2009cited by this paper
• Comparative transcriptomic characterization of aluminum, sodium chloride, cadmium and copper rhizotoxicities in Arabidopsis thaliana

  2009cited by this paper
• The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments.

  2009cited by this paper
• Microarray analysis of Arabidopsis genome response to aluminum stress

  2009cited by this paper
• Aluminum-activated citrate and malate transporters from the MATE and ALMT families function independently to confer Arabidopsis aluminum tolerance.

  2009cited by this paper
• RNA-Seq: a revolutionary tool for transcriptomics

  2009cited by this paper
• Identification of an Arabidopsis transmembrane bZIP transcription factor involved in the endoplasmic reticulum stress response.

  2008cited by this paper
• Transcriptomic responses to aluminum stress in roots of Arabidopsis thaliana

  2008cited by this paper
• Identification of genes and pathways associated with aluminum stress and tolerance using transcriptome profiling of wheat near-isogenic lines

  2008cited by this paper
• Arabidopsis TAO1 is a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB

  2008cited by this paper
• Arabidopsis ALS1 encodes a root tip and stele localized half type ABC transporter required for root growth in an aluminum toxic environment

  2007cited by this paper
• Characterization of AtALMT1 Expression in Aluminum-Inducible Malate Release and Its Role for Rhizotoxic Stress Tolerance in Arabidopsis1[W][OA]

  2007cited by this paper
• The ring between ring fingers (RBR) protein family

  2007cited by this paper
• Natural variation of Arabidopsis thaliana reveals that aluminum resistance and proton resistance are controlled by different genetic factors

  2007cited by this paper
• A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum

  2007cited by this paper
• Spatial coordination of aluminium uptake, production of reactive oxygen species, callose production and wall rigidification in maize roots.

  2006cited by this paper
• Sequence upstream of the wheat (Triticum aestivum L.) ALMT1 gene and its relationship to aluminum resistance.

  2006cited by this paper
• AtALMT1, which encodes a malate transporter, is identified as one of several genes critical for aluminum tolerance in Arabidopsis.

  2006cited by this paper
• Genome-Wide Identification and Testing of Superior Reference Genes for Transcript Normalization in Arabidopsis1[w]

  2005cited by this paper
• Functional Analysis of the RING-Type Ubiquitin Ligase Family of Arabidopsis1[w]

  2005cited by this paper
• ALS3 encodes a phloem-localized ABC transporter-like protein that is required for aluminum tolerance in Arabidopsis.

  2004cited by this paper
• How do crop plants tolerate acid soils? Mechanisms of aluminum tolerance and phosphorous efficiency.

  2004cited by this paper
• An intracellular mechanism of aluminum tolerance associated with high antioxidant status in cultured tobacco cells.

  2003cited by this paper
• Identification and Characterization of the ARIADNEGene Family in Arabidopsis. A Group of Putative E3 Ligases1

  2003cited by this paper
• Gene Expression Phenotypes of Arabidopsis Associated with Sensitivity to Low Temperatures[w]

  2003cited by this paper
• Aluminum toxicity is associated with mitochondrial dysfunction and the production of reactive oxygen species in plant cells.

  2002cited by this paper
• Enhanced accumulation of BiP in transgenic plants confers tolerance to water stress.

  2001cited by this paper
• Cellular Mechanisms of Aluminum Toxicity and Resistance in Plants

  1995cited by this paper
• The Effects of Aluminum on the Influx of Calcium, Potassium, Ammonium, Nitrate, and Phosphate in an Aluminum-Sensitive Cultivar of Barley (Hordeum vulgare L.)

  1993cited by this paper
• Effects of sulfur nutrition on expression of the soybean seed storage protein genes in transgenic petunia.

  1992cited by this paper
• Journal of Experimental Botany Advance Access published December 3, 2008 Journal of Experimental Botany, Page 1 of 14

  year unknowncited by this paper

• The multifaceted role of sodium nitroprusside in plants: crosstalk with phytohormones under normal and stressful conditions

  2024cites this paper
• Micromorphological and Physiological Responses of Two Contrasting Centipedegrass (Eremochloa ophiuroides (Munro) Hack.) Genotypes in Response to Aluminum Toxicity

  2023cites this paper
• STOP1‐regulated SMALL AUXIN UP RNA55 (SAUR55) is involved in proton/malate co‐secretion for Al tolerance in Arabidopsis

  2023cites this paper
• Differential Transcriptional Regulation of Drought Stress Revealed by Comparative RNA-seq Analysis of Contrasting indica Rice from North East India

  2023cites this paper
• Reprogramming of sorghum proteome in response to sugarcane aphid infestation.

  2022cites this paper
• Physiological changes and transcriptome profiling in Saccharum spontaneum L. leaf under water stress and re-watering conditions

  2021cites this paper
• Genome-wide expression analysis reveals contrasting regulation of phosphate starvation response (PSR) in root and shoot of Arabidopsis and its association with biotic stress

  2021cites this paper
• Comparative Inter- and IntraSpecies Transcriptomics Revealed Key Differential Pathways Associated With Aluminium Stress Tolerance in Lentil

  2021cites this paper
• Comparative analysis of wild type accessions reveals novel determinants of Arabidopsis seed longevity

  2021cites this paper
• Alleviating aluminum toxicity in plants: implications of reactive oxygen species signalling and crosstalk with other signaling pathways.

  2021cites this paper
• Root Adaptation via Common Genetic Factors Conditioning Tolerance to Multiple Stresses for Crops Cultivated on Acidic Tropical Soils

  2020cites this paper
• Influence of the plant growth promoting Rhizobium panacihumi on aluminum resistance in Panax ginseng

  2020cites this paper
• Genome-Wide Association Study and Genomic Prediction Elucidate the Distinct Genetic Architecture of Aluminum and Proton Tolerance in Arabidopsis thaliana

  2020cites this paper
• A single‐population GWAS identified AtMATE expression level polymorphism caused by promoter variants is associated with variation in aluminum tolerance in a local Arabidopsis population

  2020cites this paper
• Dissection of Root Transcriptional Responses to Low pH, Aluminum Toxicity and Iron Excess Under Pi-Limiting Conditions in Arabidopsis Wild-Type and stop1 Seedlings

  2020cites this paper
• Comparative RNA-Seq analysis of the root revealed transcriptional regulation system for aluminum tolerance in contrasting indica rice of North East India

  2020cites this paper
• Characterization of NtSTOP1-regulating genes in tobacco under aluminum stress

  2019cites this paper
• Integrated Transcriptome Analysis Reveals Plant Hormones Jasmonic Acid and Salicylic Acid Coordinate Growth and Defense Responses upon Fungal Infection in Poplar

  2019cites this paper
• A member of the CONSTANS-Like protein family is a putative regulator of reactive oxygen species homeostasis and spaceflight physiological adaptation

  2018cites this paper
• Comparative characterization of aluminum responsive transcriptome in Arabidopsis roots: comparison with other rhizotoxic ions at different stress intensities

  2018cites this paper
• Aluminum-responsive genes revealed by RNA-Seq and related physiological responses in leaves of two Citrus species with contrasting aluminum-tolerance.

  2018cites this paper
• Coexpression network revealing the plasticity and robustness of population transcriptome during the initial stage of domesticating energy crop Miscanthus lutarioriparius

  2018cites this paper
• Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms

  2017cites this paper