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A novel bioprinting application for the production of reference material containing a defined copy number of target DNA.

Manabu Seo,R. Takabatake,S. Izumi,Hirotaka Unno,Yudai Kawashima,Unoh Ki,S. Hatada,I. Katoh,S. Nakazawa,Takahiko Matsumoto,Yuuki Yonekawa,M. Hashimoto,Waka Lin,Reo Maeda,Riztyan,Mari Onishi,S. Futo,Masahiro Kishine,K. Kitta

Published 2019 in Analytical Chemistry

ABSTRACT

Nucleic acid amplification methods, such as polymerase chain reaction (PCR), are extensively used in many applications to detect target DNA because of their high sensitivity, good reproducibility, and wide dynamic range of quantification. However, analytical quality control when detecting low copy number target DNA is often missing because of a lack of appropriate reference materials. Recent advances in analytical sciences require a method to accurately quantify DNA at the single molecule level. Herein, we have developed a novel method to produce reference material containing a defined copy number of target DNA (referred to as "cell number-based DNA reference material"). In this method, a suspension of cells carrying a single target DNA sequence was ejected by inkjet head and the number of cells in each droplet was counted using highly sensitive cameras. The resulting solutions contained a defined copy number of target DNA and could be used as reference materials. The use of the newly developed reference material was compared with that of diluted solutions of target DNA to evaluate the performance of qualitative real-time PCR in terms of the limit of detection (LOD). Our results demonstrated that cell number-based DNA reference material provides more accurate information regarding performance quality. The reference material produced by this method is a promising tool to evaluate assay performance.

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