Regulation and epigenetic control of transcription at the nuclear periphery.

No abstract is available for this paper.

• Publication year

  2007

• Venue

  Trends in Genetics

• Publication date

  2007-08-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/J.TIG.2007.05.009PMID 17566592
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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• Nuclear pore association confers optimal expression levels for an inducible yeast gene

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• Nup-PI: the nucleopore-promoter interaction of genes in yeast.

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• Intermingling of Chromosome Territories in Interphase Suggests Role in Translocations and Transcription-Dependent Associations

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• Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin.

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• The mobile nucleoporin Nup2p and chromatin-bound Prp20p function in endogenous NPC-mediated transcriptional control

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• Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization.

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• Nuclear retention of unspliced mRNAs in yeast is mediated by perinuclear Mlp1.

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• Proteins Connecting the Nuclear Pore Complex with the Nuclear Interior

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• Perinuclear localization of chromatin facilitates transcriptional silencing

  1998cited by this paper
• Structure and dynamics of human interphase chromosome territories in vivo

  1998cited by this paper
• Essential functional interactions of SAGA, a Saccharomyces cerevisiae complex of Spt, Ada, and Gcn5 proteins, with the Snf/Swi and Srb/mediator complexes.

  1997cited by this paper
• Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex.

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• Fusion of the nucleoporin gene NUP98 to HOXA9 by the chromosome translocation t(7;11)(p15;p15) in human myeloid leukaemia

  1996cited by this paper
• Chromosome topology in mammalian interphase nuclei.

  1991cited by this paper
• Studies concerning the temporal and genetic control of cell polarity in Saccharomyces cerevisiae

  1991cited by this paper
• Three-dimensional analysis of morphogenesis induced by mating pheromone alpha factor in Saccharomyces cerevisiae.

  1989cited by this paper
• Higher order structure is present in the yeast nucleus: autoantibody probes demonstrate that the nucleolus lies opposite the spindle pole body

  1989cited by this paper
• Expression of the Saccharomyces cerevisiae inositol-1-phosphate synthase (INO1) gene is regulated by factors that affect phospholipid synthesis

  1986cited by this paper
• Gene gating: a hypothesis.

  1985cited by this paper
• Localization of DNAase I-sensitive sequences to specific regions of interphase nuclei.

  1985cited by this paper
• The organization and transcription of the galactose gene cluster of Saccharomyces.

  1981cited by this paper
• Arrangement of chromatin in the nucleus

  1980cited by this paper

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