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COMPUTATIONAL MODELING OF SELF-ORGANIZATION OF BACTERIAL POPULATION CONSISTING OF SUBPOPULATIONS OF ACTIVE AND PASSIVE CELLS

Žilvinas Ledas,R. Šimkus,R. Baronas

Published 2019 in Journal of biological systems

ABSTRACT

This paper deals with the computational modeling of the bioluminescence pattern formation in suspensions of Escherichia coli bacteria. The aim was to develop a computational model for simulating the bacterial populations consisting of two subpopulations of active and passive cells. A suitable model based on Keller–Segel and Fisher equations was proposed and the spatiotemporal patterns were simulated using the finite difference technique. The influence of cell activation, deactivation, chemotactic sensitivity, growth rate and saturating signal production parameter values on the pattern formation was investigated. The proposed model can be used to effectively simulate quasi-one-dimensional spatiotemporal patterns. We provide a simple qualitative explanation of the experimental results and estimated model parameters. In particular, it is argued that the effective model simulates patterns of evaporation-driven convection in open-to-air suspensions of cells that can be either active or passive.

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