Building meaningful models of glycoproteins

No abstract is available for this paper.

• Publication year

  2007

• Venue

  Nature Structural &Molecular Biology

• Publication date

  2007-05-01

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1038/NSMB0507-354APMID 17473875
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Structure of the Epstein-Barr virus major envelope glycoprotein

  2006cited by this paper
• Conformational studies of oligosaccharides and glycopeptides: complementarity of NMR, X-ray crystallography, and molecular modelling.

  2002cited by this paper
• Protein glucosylation and its role in protein folding.

  2000cited by this paper
• A statistical analysis of N- and O-glycan linkage conformations from crystallographic data.

  1999cited by this paper
• Insect cells as hosts for the expression of recombinant glycoproteins

  1999cited by this paper

• Pitfalls in the Modeling of Maltoside Detergents in Protein Structures

  2025cites this paper
• Structural basis for complement receptor engagement and virus neutralization through Epstein-Barr virus gp350.

  2025cites this paper
• Monitoring carbohydrate 3D structure quality with the Privateer database

  2024cites this paper
• Online carbohydrate 3D structure validation with the Privateer web app

  2024cites this paper
• Research landmarks on the 60th anniversary of Epstein-Barr virus

  2024cites this paper
• Glycosylation increases active site rigidity leading to improved enzyme stability and turnover

  2023cites this paper
• Analysis and validation of overall N-glycan conformation in Privateer

  2023cites this paper
• Unparalleled Diversity and Functionality of the Glycome Beilstein

  2023cites this paper
• Glycosciences.de: Databases and Tools to Support Research in Glycomics and Glycoproteomics

  2021cites this paper
• Comparison of Carbohydrate Force Fields in Molecular Dynamics Simulations of Protein-Carbohydrate Complexes.

  2021cites this paper
• Leveraging glycomics data in glycoprotein 3D structure validation with Privateer

  2020cites this paper
• Iris: Interactive all‐in‐one graphical validation of 3D protein model iterations

  2020cites this paper
• Three-Dimensional Structures of Carbohydrates and Where to Find Them

  2020cites this paper
• Structural glycobiology in the age of electron cryo-microscopy.

  2019cites this paper
• Building and rebuilding N-glycans in protein structure models

  2019cites this paper
• Current developments in Coot for macromolecular model building of Electron Cryo‐microscopy and Crystallographic Data

  2019cites this paper
• Making glycoproteins a little bit sweeter with PDB-REDO

  2018cites this paper
• Structure and Immune Recognition of the HIV Glycan Shield.

  2018cites this paper
• Structural analysis of glycoproteins: building N-linked glycans with Coot

  2018cites this paper
• Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in LiteMol.

  2018cites this paper
• Strategies for carbohydrate model building, refinement and validation

  2017cites this paper
• Ligand fitting with CCP4

  2017cites this paper
• Glycan Data Retrieval and Analysis Using GLYCOSCIENCES.de Applications

  2017cites this paper
• Carbohydrate structure: the rocky road to automation.

  2017cites this paper
• Carbohydrate 3D structure validation.

  2017cites this paper
• Glycoblocks: a schematic three-dimensional representation for glycans and their interactions

  2016cites this paper
• Molecular dynamics simulations of glycoproteins using CHARMM.

  2015cites this paper
• Tools to assist determination and validation of carbohydrate 3D structure data.

  2015cites this paper
• GlycoMob: an ion mobility-mass spectrometry collision cross section database for glycomics

  2015cites this paper
• Structural glycobiology of heparinase II from Pedobacter heparinus

  2014cites this paper
• Databases and tools in glycobiology.

  2012cites this paper
• The use of glycoinformatics in glycochemistry

  2012cites this paper
• NMR spectroscopy: an excellent tool to understand RNA and carbohydrate recognition by proteins.

  2012cites this paper
• Isotype and glycoform selection for antibody therapeutics.

  2012cites this paper
• CHARMM Additive All-Atom Force Field for Phosphate and Sulfate Linked to Carbohydrates.

  2012cites this paper
• Structural Biology of Glycoproteins

  2012cites this paper
• A New Generation of Crystallographic Validation Tools for the Protein Data Bank

  2011influential citation
• Carbohydrate Structure Databases

  2010cites this paper
• Bioinformatics and molecular modeling in glycobiology

  2010influential citation
• GROMOS96 43a1 performance in predicting oligosaccharide conformational ensembles within glycoproteins.

  2010cites this paper
• Solutions to the Glycosylation Problem for Low- and High-Throughput Structural Glycoproteomics

  2010cites this paper
• Analysis and validation of carbohydrate three-dimensional structures

  2009cites this paper
• Chapter 4. Antibody Glycosylation

  2009cites this paper
• Visualisation of cyclic and multi-branched molecules with VMD.

  2009cites this paper
• The antibody paradigm: present and future development as a scaffold for biopharmaceutical drugs

  2009cites this paper
• Carbohydrate and domain architecture of an immature antibody glycoform exhibiting enhanced effector functions.

  2009cites this paper
• Characterization of an inhibitory dynamic pharmacophore for the ERCC1-XPA interaction using a combined molecular dynamics and virtual screening approach.

  2009cites this paper
• Web Resources for the Glycoscientist

  2008cites this paper
• Limitations and lessons in the use of X-ray structural information in drug design

  2008cites this paper
• Visualization software for molecular assemblies.

  2007cites this paper
• Glycoconjugate Data Bank:Structures—an annotated glycan structure database and N-glycan primary structure verification service

  2007cites this paper
• Protein Three-Dimensional Structure Validation

  2007cites this paper