Correlated Mutations and Homologous Recombination Within Bacterial Populations

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Genetics

• Publication date

  2016-12-20

• Fields of study

  Biology, Medicine, Computer Science, Environmental Science

• Identifiers
  DOI 10.1534/genetics.116.189621PMID 28007887PMCID PMC5289858
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Sequential Acquisition of Virulence and Fluoroquinolone Resistance Has Shaped the Evolution of Escherichia coli ST131

  2016influential reference
• Inferring Horizontal Gene Transfer

  2015cited by this paper
• Horizontal gene transfer: building the web of life

  2015cited by this paper
• Recombinant transfer in the basic genome of Escherichia coli

  2015influential reference
• Fine-scale diversity and extensive recombination in a quasisexual bacterial population occupying a broad niche

  2015cited by this paper
• Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

  2014cited by this paper
• R: A language and environment for statistical computing.

  2014cited by this paper
• Global dissemination of a multidrug resistant Escherichia coli clone

  2014influential reference
• Transfer of noncoding DNA drives regulatory rewiring in bacteria

  2014cited by this paper
• Dense genomic sampling identifies highways of pneumococcal recombination

  2014influential reference
• The Epidemic of Extended-Spectrum-β-Lactamase-Producing Escherichia coli ST131 Is Driven by a Single Highly Pathogenic Subclone, H30-Rx

  2013cited by this paper
• Inference of the Properties of the Recombination Process from Whole Bacterial Genomes

  2013cited by this paper
• Coalescence and genetic diversity in sexual populations under selection

  2013cited by this paper
• The Rate of Adaptation in Large Sexual Populations with Linear Chromosomes

  2013cited by this paper
• Genetic Diversity and the Structure of Genealogies in Rapidly Adapting Populations

  2012cited by this paper
• Limits to the Rate of Adaptive Substitution in Sexual Populations

  2012cited by this paper
• Genealogies of rapidly adapting populations

  2012cited by this paper
• Population Genomics of Early Events in the Ecological Differentiation of Bacteria

  2012cited by this paper
• Quantifying Homologous Replacement of Loci between Haloarchaeal Species

  2012cited by this paper
• Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli

  2012influential reference
• Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing

  2012cited by this paper
• Haplotype-based variant detection from short-read sequencing

  2012cited by this paper
• Detection of recombination events in bacterial genomes from large population samples

  2011cited by this paper
• Biased gene transfer in microbial evolution

  2011cited by this paper
• Dynamics of the evolving Bolthausen-Sznitman coalecent

  2011cited by this paper
• Rapid Pneumococcal Evolution in Response to Clinical Interventions

  2011cited by this paper
• Rate of Adaptation in Large Sexual Populations

  2010cited by this paper
• Inference of Homologous Recombination in Bacteria Using Whole-Genome Sequences

  2010cited by this paper
• A comparison of homologous recombination rates in bacteria and archaea

  2009cited by this paper
• Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

  2009influential reference
• The Sequence Alignment/Map format and SAMtools

  2009cited by this paper
• The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

  2009cited by this paper
• Universal tree structures in directed polymers and models of evolving populations.

  2008cited by this paper
• Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

  2008cited by this paper
• Effect of selection on ancestry: an exactly soluble case and its phenomenological generalization.

  2007cited by this paper
• Inference of Bacterial Microevolution Using Multilocus Sequence Data

  2007cited by this paper
• Recombination and the Nature of Bacterial Speciation

  2007influential reference
• The inverses of block tridiagonal matrices

  2006cited by this paper
• Modelling bacterial speciation

  2006cited by this paper
• Mechanisms of, and Barriers to, Horizontal Gene Transfer between Bacteria

  2005influential reference
• Recombination dramatically speeds up evolution of finite populations.

  2004cited by this paper
• The Fine-Scale Structure of Recombination Rate Variation in the Human Genome

  2004cited by this paper
• A coalescent-based method for detecting and estimating recombination from gene sequences.

  2002cited by this paper
• Coalescents with Simultaneous Multiple Collisions

  2000cited by this paper
• The coalescent with gene conversion.

  2000cited by this paper
• A coalescence approach to gene conversion.

  2000cited by this paper
• A Necessary and Sufficient Condition for the $\Lambda$-Coalescent to Come Down from Infinity.

  2000cited by this paper
• The general coalescent with asynchronous mergers of ancestral lines

  1999cited by this paper
• Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda.

  1999cited by this paper
• Coalescents with multiple collisions

  1999cited by this paper
• Recombinational Repair of DNA Damage inEscherichia coli and Bacteriophage λ

  1999cited by this paper
• On Ruelle's Probability Cascades and an Abstract Cavity Method

  1998influential reference
• Population Genetics of Bacteria

  1995cited by this paper
• Bacterial gene transfer by natural genetic transformation in the environment.

  1994cited by this paper
• Genetic distance and species formation in evolving populations

  1992cited by this paper
• The population genetics of bacteria

  1991cited by this paper
• Properties of a neutral allele model with intragenic recombination.

  1983cited by this paper
• On the genealogy of large populations

  1982cited by this paper
• Block diagonally dominant matrices and generalizations of the Gerschgorin circle theorem

  1962cited by this paper
• Random processes in genetics

  1958cited by this paper

• Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population

  2025cites this paper
• Bursts of reproduction can create genetic structure in frequently recombining bacterial populations

  2025cites this paper
• How recombination and clonal evolution shape bacterial lineages and genomes.

  2025cites this paper
• Unraveling the tempo and mode of horizontal gene transfer in bacteria.

  2025cites this paper
• Linkage equilibrium between rare mutations

  2024cites this paper
• Long-term evolution of Streptococcus mitis and Streptococcus pneumoniae leads to higher genetic diversity within rather than between human populations

  2024cites this paper
• Dynamics of bacterial recombination in the human gut microbiome

  2023cites this paper
• Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population

  2023cites this paper
• It takes a village to build a virus

  2023cites this paper
• Correlated substitutions reveal SARS-like coronaviruses recombine frequently with a diverse set of structured gene pools

  2022cites this paper
• Comparative Population Genetics in the Human Gut Microbiome

  2021cites this paper
• Core genes can have higher recombination rates than accessory genes within global microbial populations

  2021cites this paper
• Unbiased homeologous recombination during pneumococcal transformation allows for multiple chromosomal integration events

  2020cites this paper
• Inferring bacterial recombination rates from large-scale sequencing datasets

  2019cites this paper
• Homologous Recombination in Core Genomes Facilitates Marine Bacterial Adaptation

  2018cites this paper
• The role of recombination in evolutionary adaptation of Escherichia coli to a novel nutrient

  2017cites this paper
• Weak Epistasis May Drive Adaptation in Recombining Bacteria

  2017cites this paper
• Stronger selection can slow down evolution driven by recombination on a smooth fitness landscape

  2017cites this paper