Growth phase-dependent transcription of the sigma(54)-dependent Po promoter controlling the Pseudomonas-derived (methyl)phenol dmp operon of pVI150

No abstract is available for this paper.

• Publication year

  1996

• Venue

  Journal of Bacteriology

• Publication date

  1996-07-01

• Fields of study

  Biology, Medicine, Chemistry, Environmental Science

• Identifiers
  DOI 10.1128/jb.178.13.3727-3735.1996PMID 8682773PMCID PMC232629
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Signal sensing by σ54‐dependent regulators: derepression as a control mechanism

  1996cited by this paper
• Involvement of sigma 54 in exponential silencing of the Pseudomonas putida TOL plasmid Pu promoter.

  1996cited by this paper
• The regulation of transcription initiation by integration host factor

  1995cited by this paper
• Direct regulation of the ATPase activity of the transcriptional activator DmpR by aromatic compounds

  1995cited by this paper
• rpoE, the gene encoding the second heat‐shock sigma factor, sigma E, in Escherichia coli.

  1995cited by this paper
• A carbon starvation survival gene of Pseudomonas putida is regulated by sigma 54

  1995cited by this paper
• Effector-mediated stimulation of ATPase activity by the sigma 54-dependent transcriptional activator FHLA from Escherichia coli

  1995cited by this paper
• Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600

  1994cited by this paper
• Optimization and maintenance of soluble methane monooxygenase activity inMethylosinus trichosporium OB3b

  1994cited by this paper
• Promoters responsive to DNA bending: a common theme in prokaryotic gene expression.

  1994cited by this paper
• Genetics and biochemistry of phenol degradation byPseudomonas sp. CF600

  1994cited by this paper
• The role of the sigma factor sigma S (KatF) in bacterial global regulation.

  1994cited by this paper
• Transcriptional induction kinetics from the promoters of the catabolic pathways of TOL plasmid pWW0 of Pseudomonas putida for metabolism of aromatics

  1994influential reference
• Inducibility of the TOL catabolic pathway in Pseudomonas putida (pWW0) growing on succinate in continuous culture: evidence of carbon catabolite repression control

  1994influential reference
• Expression of the genes coding for the Escherichia coli integration host factor are controlled by growth phase, rpoS, ppGpp and by autoregulation

  1994cited by this paper
• Cross-regulation by XylR and DmpR activators of Pseudomonas putida suggests that transcriptional control of biodegradative operons evolves independently of catabolic genes

  1994cited by this paper
• Genetic evidence for activation of the positive transcriptional regulator Xy1R, a member of the NtrC family of regulators, by effector binding.

  1994cited by this paper
• An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols

  1994cited by this paper
• Growth phase variation of integration host factor level in Escherichia coli

  1994cited by this paper
• Carbon source-dependent inhibition of xyl operon expression of the Pseudomonas putida TOL plasmid

  1994influential reference
• Rhizobium meliloti DctD, a σ54‐dependent transcriptional activator, may be negatively controlled by a subdomain in the C‐terminal end of its two‐component receiver module

  1994cited by this paper
• The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains

  1993cited by this paper
• Analysis of Pseudomonas gene products using lacIq/Ptrp-lac plasmids and transposons that confer conditional phenotypes.

  1993cited by this paper
• Early and late responses of TOL promoters to pathway inducers: identification of postexponential promoters in Pseudomonas putida with lacZ-tet bicistronic reporters

  1993influential reference
• Microbial competition: Escherichia coli mutants that take over stationary phase cultures.

  1993cited by this paper
• Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: the puzzle of nitrogen regulatory protein C

  1993cited by this paper
• Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVI150 and identification of DmpR as a member of the NtrC family of transcriptional activators

  1993cited by this paper
• The prokaryotic enhancer binding protein NTRC has an ATPase activity which is phosphorylation and DNA dependent.

  1992cited by this paper
• The Fis protein: it's not just for DNA inversion anymore

  1992cited by this paper
• Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600

  1992cited by this paper
• Molecular cloning and physical mapping of the otsBA genes, which encode the osmoregulatory trehalose pathway of Escherichia coli: evidence that transcription is activated by katF (AppR)

  1992cited by this paper
• The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription.

  1991cited by this paper
• Growth phase-regulated expression of bolA and morphology of stationary-phase Escherichia coli cells are controlled by the novel sigma factor sigma S

  1991cited by this paper
• Growth-phase-dependent expression of the Pseudomonas putida TOL plasmid pWW0 catabolic genes

  1990cited by this paper
• Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria

  1990influential reference
• Involvement of integration host factor (IHF) in maintenance of plasmid pSC101 in Escherichia coli: characterization of pSC101 mutants that replicate in the absence of IHF

  1989cited by this paper
• Molecular analysis of a plasmid-encoded phenol hydroxylase from Pseudomonas CF600.

  1989cited by this paper
• The use of the luxA gene of the bacterial luciferase operon as a reporter gene

  1988cited by this paper
• Isolation of the gene encoding the Hin recombinational enhancer binding protein.

  1988cited by this paper
• Nucleotide sequence and expression of gene nahH of plasmid NAH7 and homology with gene xylE of TOL pWWO.

  1987cited by this paper
• Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli

  1987cited by this paper
• Molecular cloning of the plasmid RP4 primase region in a multi-host-range tacP expression vector.

  1986cited by this paper
• Experiments With Gene Fusions

  1984cited by this paper
• Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway.

  1981cited by this paper
• Analysis of gene control signals by DNA fusion and cloning in Escherichia coli.

  1980cited by this paper
• [65] Metapyrocatechase (Pseudomonas)☆

  1970cited by this paper
• Phospholipid Alterations During Growth of Escherichia coli

  1968cited by this paper

• High-resolution mapping of sigma factor DNA-binding sequences using artificial promoters, RNA aptamers, and deep sequencing

  2024influential citation
• The acetoin assimilation pathway of Pseudomonas putida KT2440 is regulated by overlapping global regulatory elements that respond to nutritional cues

  2022cites this paper
• Elevated levels of VCA0117 (VasH) in response to external signals activates the type VI secretion system of Vibrio cholerae O1 El Tor A1552.

  2020cites this paper
• Acclimation of bacterial cell state for high-throughput enzyme engineering using a DmpR-dependent transcriptional activation system

  2020cites this paper
• Inhibition of anammox activity by phenol: Suppression effect, community analysis and mechanism simulation

  2019cites this paper
• The Y233 gatekeeper of DmpR modulates effector‐responsive transcriptional control of &sgr;54‐RNA polymerase

  2019cites this paper
• Multiple Hfq‐Crc target sites are required to impose catabolite repression on (methyl)phenol metabolism in Pseudomonas putida CF600

  2018cites this paper
• Molecular mechanisms of cytotoxicity regulation in pseudomonas aeruginosa by the magnedium transporter MGTE

  2017cites this paper
• Development of Colorimetric-Based Whole-Cell Biosensor for Organophosphorus Compounds by Engineering Transcription Regulator DmpR.

  2016cites this paper
• Inter-sigmulon communication through topological promoter coupling

  2016cites this paper
• The Genus Pseudomonas

  2015cites this paper
• Transcriptional and translational control through the 5'-leader region of the dmpR master regulatory gene of phenol metabolism.

  2015cites this paper
• A second chromosomal copy of the catA gene endows Pseudomonas putida mt-2 with an enzymatic safety valve for excess of catechol.

  2014cites this paper
• Characterization of the transcriptional stimulatory properties of the Pseudomonas putida RapA protein.

  2013cites this paper
• Ana Raquel Maceiras de Oliveira

  2011cites this paper
• Carbon catabolite repression in Pseudomonas : optimizing metabolic versatility and interactions with the environment.

  2010cites this paper
• σ54-Promoter Discrimination and Regulation by ppGpp and DksA*

  2009cites this paper
• On the role of small regulatory molecules in the interplay between σ54- and σ70-dependent transcription

  2009influential citation
• σ54‐RNA polymerase controls σ70‐dependent transcription from a non‐overlapping divergent promoter

  2008cites this paper
• The role of FIS protein in the physiological control of the expression of the Escherichia coli meta-hpa operon.

  2008cites this paper
• Metabolism-dependent taxis towards (methyl)phenols is coupled through the most abundant of three polar localized Aer-like proteins of Pseudomonas putida.

  2008cites this paper
• TOL plasmid transfer during bacterial conjugation in vitro and rhizoremediation of oil compounds in vivo.

  2007cites this paper
• Study of factors which negatively affect expression of the phenol degradation operon pheBA in Pseudomonas putida.

  2007cites this paper
• Properties of RNA Polymerase Bypass Mutants

  2007cites this paper
• On the role of ppGpp and DksA mediated control of σ54-dependent transcription

  2006cites this paper
• Control catabólico y factores genéticos implicados en la respuesta de Pseudomonas putida KT2440 a situaciones ambientales

  2006cites this paper
• The guanosine tetraphosphate (ppGpp) alarmone, DksA and promoter affinity for RNA polymerase in regulation of σ54‐dependent transcription

  2006influential citation
• The Chemical Ecology of Pollutant Biodegradation: Bioremediation and Phytoremediation from Mechanistic and Ecological Perspectives

  2006cites this paper
• Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes

  2005cites this paper
• m-Xylene-Responsive Pu-PnifH Hybrid σ54 Promoters That Overcome Physiological Control in Pseudomonas putida KT2442

  2005cites this paper
• Physiological stress of intracellular Shigella flexneri visualized with a metabolic sensor fused to a surface‐reporter system

  2005cites this paper
• Regulation of transcription of the phenol degradation pheBA operon in Pseudomonas putida

  2005cites this paper
• TouR-Mediated Effector-Independent Growth Phase-Dependent Activation of the σ54 Ptou Promoter of Pseudomonas stutzeri OX1

  2004cites this paper
• Transcriptional Regulation and Catabolic Strategies of Phenol Degradative Pathways

  2004cites this paper
• MOLEKULAAR- JA RAKUBIOLOOGIA INSTITUUT GENEETIKA ÕPPETOOL

  2004cites this paper
• Catabolite Repression and Physiological Control

  2004cites this paper
• Aromatic metabolism versus carbon availability: the regulatory network that controls catabolism of less-preferred carbon sources in Escherichia coli.

  2004cites this paper
• Induction of phenol utilization in Pseudomonas CF600 grown under varying nitrogen levels

  2003cites this paper
• Deciphering environmental signal integration in sigma54-dependent promoters with a simple mathematical model.

  2003cites this paper
• Integrated regulation in response to aromatic compounds: from signal sensing to attractive behaviour.

  2003cites this paper
• Deciphering environmental signal integration in σ54-dependent promoters with a simple mathematical model

  2003cites this paper
• The Role of the Alarmone (p)ppGpp in ςN Competition for Core RNA Polymerase*

  2003cites this paper
• Integration of Global Regulation of Two Aromatic-Responsive σ54-Dependent Systems: a Common Phenotype by Different Mechanisms

  2002cites this paper
• Inactivation of Cytochrome o Ubiquinol Oxidase Relieves Catabolic Repression of the Pseudomonas putida GPo1 Alkane Degradation Pathway

  2002cites this paper
• Analysis of the zwf-pgl-eda-operon in Pseudomonas putida strains H and KT2440.

  2002cites this paper
• In Vivo UV Laser Footprinting of thePseudomonas putida ς54 PuPromoter Reveals That Integration Host Factor Couples Transcriptional Activity to Growth Phase*

  2002cites this paper
• Specific and global regulation of genes associated with the degradation of aromatic compounds in bacteria.

  2002cites this paper
• Occurrence and properties of glutathione S-transferases in phenol-degrading Pseudomonas strains.

  2002cites this paper
• The limits to genomic predictions: role of sigma(N) in environmental stress survival of Pseudomonas putida.

  2001cites this paper
• Transcriptional Organization and Dynamic Expression of thehbpCAD Genes, Which Encode the First Three Enzymes for 2-Hydroxybiphenyl Degradation in Pseudomonas azelaica HBP1

  2001cites this paper
• An active role for a structured B‐linker in effector control of the σ54‐dependent regulator DmpR

  2001cites this paper
• Growth medium composition-determined regulatory mechanisms are superimposed on CatR-mediated transcription from the pheBA and catBCA promoters in Pseudomonas putida.

  2001cites this paper
• Carbon limitation induces sigma(S)-dependent gene expression in Pseudomonas fluorescens in soil.

  2001cites this paper
• Role of the crc Gene in Catabolic Repression of the Pseudomonas putida GPo1 Alkane Degradation Pathway

  2001cites this paper
• The black cat/white cat principle of signal integration in bacterial promoters.

  2001cites this paper
• Carbon Limitation Induces ςS-Dependent Gene Expression in Pseudomonas fluorescens in Soil

  2001cites this paper
• The regulatory N-terminal region of the aromatic-responsive transcriptional activator DmpR constrains nucleotide-triggered multimerisation.

  2001cites this paper
• The Alkane Hydroxylase Gene of Burkholderia cepacia RR10 Is under Catabolite Repression Control

  2001cites this paper
• PhcS Represses Gratuitous Expression of Phenol-Metabolizing Enzymes in Comamonas testosteroni R5

  2001cites this paper
• In Vivo and In Vitro Effects of Integration Host Factor at the DmpR-Regulated ς54-Dependent Po Promoter

  2001cites this paper
• Role of the DmpR-Mediated Regulatory Circuit in Bacterial Biodegradation Properties in Methylphenol-Amended Soils

  2001cites this paper
• Biodegradation of Phenol: Mechanisms and Applications

  2000cites this paper
• Characterization and Role of tbuX in Utilization of Toluene by Ralstonia pickettii PKO1

  2000cites this paper
• Generation of Novel Bacterial Regulatory Proteins That Detect Priority Pollutant Phenols

  2000cites this paper
• Genetic Evidence of Distinct Physiological Regulation Mechanisms in the ς54Pu Promoter ofPseudomonas putida

  2000cites this paper
• In Vivo and In Vitro Effects of (p)ppGpp on the ς54 Promoter Pu of the TOL Plasmid ofPseudomonas putida

  2000cites this paper
• An artificial enhancer with multiple response elements stimulates prokaryotic transcriptional activation mediated by various regulatory proteins

  1999influential citation
• Novel Effector Control through Modulation of a Preexisting Binding Site of the Aromatic-responsive ς54-Dependent Regulator DmpR*

  1999cites this paper
• The alarmone (p)ppGpp mediates physiological‐responsive control at the σ54‐dependent Po promoter

  1999cites this paper
• CRP interacts with promoter‐bound σ54 RNA polymerase and blocks transcriptional activation of the dctA promoter

  1998cites this paper
• Carbon-Source-Dependent Expression of thePalkB Promoter from the Pseudomonas oleovoransAlkane Degradation Pathway

  1998cites this paper
• Genetic requirements for the expression of benzylamine dehydrogenase activity in Pseudomonas putida

  1998cites this paper
• Aromatic ligand binding and intramolecular signalling of the phenol‐responsive σ54‐dependent regulator DmpR

  1998cites this paper
• Biological, thermal and photochemical transformation of 2-trifluoromethylphenol

  1998cites this paper
• Negative regulation by RpoS: a case of sigma factor competition

  1998cites this paper
• Expression systems and physiological control of promoter activity in bacteria.

  1998cites this paper
• Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators.

  1997cites this paper
• Cascade regulation of the toluene-3-monooxygenase operon (tbuA1UBVA2C) of Burkholderia pickettii PKO1: role of the tbuA1 promoter (PtbuA1) in the expression of its cognate activator, TbuT

  1996cites this paper
• Genetic Evidence for Interdomain Regulation of the Phenol-responsive 54-dependent Activator DmpR*

  1996cites this paper