A Catalytic and Selective Scissoring Molecular Tool for Quadruplex Nucleic Acids

M. Nadai,F. Doria,M. Scalabrin,Valentina Pirota,Vincenzo Grande,G. Bergamaschi,V. Amendola,F. Winnerdy,A. Phan,S. Richter,M. Freccero

Published 2018 in Journal of the American Chemical Society

ABSTRACT

A copper complex embedded in the structure of a water-soluble naphthalene diimide has been designed to bind and cleave G-quadruplex DNA. We describe the properties of this ligand, including its catalytic activity in the generation of ROS. FRET melting, CD, NMR, gel sequencing, and mass spectrometry experiments highlight a unique and unexpected selectivity in cleaving G-quadruplex sequences. This selectivity relies both on the binding affinity and structural features of the targeted G-quadruplexes.

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