A Tiling Microarray Expression Analysis of Rice Chromosome 4 Suggests a Chromosome-Level Regulation of Transcriptionw⃞

No abstract is available for this paper.

• Publication year

  2005

• Venue

  The Plant Cell Online

• Publication date

  2005-04-29

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1105/tpc.105.031575PMID 15863518PMCID PMC1143067
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• RACK1, A multifaceted scaffolding protein: Structure and function

  2011cited by this paper
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• The Genomes of Oryza sativa: A History of Duplications

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• RNAi-mediated pathways in the nucleus

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• Arabidopsis to Rice. Applying Knowledge from a Weed to Enhance Our Understanding of a Crop Species1

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• A principal component analysis of multifocal pattern reversal VEP.

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• Development and evaluation of an Arabidopsis whole genome Affymetrix probe array.

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• Pack-MULE transposable elements mediate gene evolution in plants

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• Sensitivity of 70-mer oligonucleotides and cDNAs for microarray analysis of gene expression in Arabidopsis and its related species.

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• The role of RNA interference in heterochromatic silencing

  2004cited by this paper
• Consistent over-estimation of gene number in complex plant genomes.

  2004cited by this paper
• Genomic shotgun array: a procedure linking large-scale DNA sequencing with regional transcript mapping.

  2004influential reference
• Chromatin-based silencing mechanisms.

  2004cited by this paper
• Role of transposable elements in heterochromatin and epigenetic control

  2004cited by this paper
• The new genes of rice: a closer look.

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• Widespread Paleopolyploidy in Model Plant Species Inferred from Age Distributions of Duplicate Genes

  2004cited by this paper
• Centromere-encoded RNAs are integral components of the maize kinetochore.

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• Structural features of the rice chromosome 4 centromere.

  2004cited by this paper
• Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing

  2004cited by this paper
• Genome-Wide in Silico Mapping of Scaffold/Matrix Attachment Regions in Arabidopsis Suggests Correlation of Intragenic Scaffold/Matrix Attachment Regions with Gene Expression1[w]

  2004cited by this paper
• Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.

  2004cited by this paper
• In-Depth View of Structure, Activity, and Evolution of Rice Chromosome 10

  2003cited by this paper
• Gene expression analyses of Arabidopsis chromosome 2 using a genomic DNA amplicon microarray.

  2003cited by this paper
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• Modeling of DNA microarray data by using physical properties of hybridization

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• A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

  2003cited by this paper
• Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome

  2003cited by this paper
• The transcriptional activity of human Chromosome 22.

  2003cited by this paper
• A Genome-Wide Analysis of Blue-Light Regulation of Arabidopsis Transcription Factor Gene Expression during Seedling Development1[w]

  2003cited by this paper
• The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists

  2003influential reference
• Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice

  2003cited by this paper
• MAANOVA: A Software Package for the Analysis of Spotted cDNA Microarray Experiments

  2003influential reference
• Formation of stable epialleles and their paramutation-like interaction in tetraploid Arabidopsis thaliana

  2003cited by this paper
• Protein–DNA interaction mapping using genomic tiling path microarrays in Drosophila

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  2002cited by this paper
• Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation.

  2002cited by this paper
• Distinct roles for jasmonate synthesis and action in the systemic wound response of tomato

  2002influential reference
• Sequence and analysis of rice chromosome 4

  2002influential reference
• Computational prediction of eukaryotic protein-coding genes

  2002cited by this paper
• Microarray data normalization and transformation

  2002cited by this paper
• DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis

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• BLAT--the BLAST-like alignment tool.

  2002cited by this paper
• The genome sequence and structure of rice chromosome 1

  2002cited by this paper
• A fine physical map of the rice chromosome 4.

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• A Comprehensive Rice Transcript Map Containing 6591 Expressed Sequence Tag Sites

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• An Integrated Physical and Genetic Map of the Rice Genome

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• Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.

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• Large-Scale Transcriptional Activity in Chromosomes 21 and 22

  2002cited by this paper
• Compositional gradients in Gramineae genes.

  2002cited by this paper
• Heterochromatin in Animals and Plants. Similarities and Differences

  2002cited by this paper
• Rice as a model for comparative genomics of plants.

  2002cited by this paper
• Plant transposable elements: where genetics meets genomics

  2002cited by this paper
• Light Control of Arabidopsis Development Entails Coordinated Regulation of Genome Expression and Cellular Pathways

  2001influential reference
• Active retrotransposons are a common feature of grass genomes.

  2001cited by this paper
• Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer

  2001cited by this paper
• Toward a cytological characterization of the rice genome.

  2001cited by this paper
• Modulation of a transcription factor counteracts heterochromatic gene silencing in Drosophila.

  2001cited by this paper
• Introduction to the Design and Analysis of Experiments

  2001cited by this paper
• Experimental annotation of the human genome using microarray technology

  2001cited by this paper
• The complete sequence of a heterochromatic island from a higher eukaryote. The Cold Spring Harbor Laboratory, Washington University Genome Sequencing Center, and PE Biosystems Arabidopsis Sequencing Consortium.

  2000cited by this paper
• Structural Domains and Matrix Attachment Regions along Colinear Chromosomal Segments of Maize and Sorghum

  2000cited by this paper
• Analysis of Variance for Gene Expression Microarray Data

  2000cited by this paper
• Developmental patterns of chromatin structure and DNA methylation responsible for epigenetic expression of a maize regulatory gene.

  2000cited by this paper
• Transcriptional transgene silencing and chromatin components

  2000cited by this paper
• Rice transposable elements: a survey of 73,000 sequence-tagged-connectors.

  2000cited by this paper
• Heterochromatin

  1999cited by this paper
• Chromatin Silencing and Arabidopsis Development: A Role for Polycomb Proteins

  1999cited by this paper
• Trans-sensing effects: the ups and downs of being together.

  1998cited by this paper
• Cytogenetics for the model system Arabidopsis thaliana.

  1998cited by this paper
• The paleontology of intergene retrotransposons of maize

  1998cited by this paper
• A high-density rice genetic linkage map with 2275 markers using a single F2 population.

  1998cited by this paper
• Structure and function in the nucleus.

  1998cited by this paper
• Comparative genetics in the grasses.

  1998cited by this paper
• Cluster analysis and display of genome-wide expression patterns.

  1998cited by this paper
• Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes.

  1997cited by this paper
• Comparative genetics in the grasses

  1997cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997cited by this paper
• Controlling the false discovery rate: a practical and powerful approach to multiple testing

  1995cited by this paper
• Reduced Position Effect in Mature Transgenic Plants Conferred by the Chicken Lysozyme Matrix-Associated Region.

  1994cited by this paper
• Comparative linkage maps of the rice and maize genomes.

  1993cited by this paper
• Metabolic derepression of alpha-amylase gene expression in suspension-cultured cells of rice.

  1991cited by this paper
• Analysis of variance

  1968cited by this paper
• ‘Heterochromatin’

  1950cited by this paper
• CHROMOSOME MORPHOLOGY IN ZEA MAYS.

  1929cited by this paper

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