SAMNetWeb: identifying condition-specific networks linking signaling and transcription

No abstract is available for this paper.

• Publication year

  2015

• Venue

  Bioinform.

• Publication date

  2015-04-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1093/bioinformatics/btu748PMID 25414365PMCID PMC4382899
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets.

  2012cited by this paper
• Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem

  2012cited by this paper
• Comprehensive molecular portraits of human breast tumors

  2012cited by this paper
• SteinerNet: a web server for integrating ‘omic’ data to discover hidden components of response pathways

  2012cited by this paper
• ResponseNet: revealing signaling and regulatory networks linking genetic and transcriptomic screening data

  2011cited by this paper
• Cytoscape Web: an interactive web-based network browser

  2010cited by this paper
• A Quantitative Model of Transcriptional Regulation Reveals the Influence of Binding Location on Expression

  2010cited by this paper
• Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity

  2009cited by this paper
• Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

  2007cited by this paper
• Cytoscape: a software environment for integrated models of biomolecular interaction networks.

  2003cited by this paper

• Advances in Bioanalytical Techniques for Toxicological Applications: Emerging Techniques, Challenges, and Future Directions.

  2025cites this paper
• MORE interpretable multi-omic regulatory networks to characterise phenotypes

  2025cites this paper
• Genomics Research on the Road of Studying Biology and Virulence of Cereal Rust Fungi

  2025cites this paper
• Multi-omics Integration Analysis: Tools and Applications in Environmental Toxicology.

  2024cites this paper
• MORE interpretable multi-omic regulatory networks to characterize phenotypes

  2024cites this paper
• Applications of Network Analysis in Biomedicine.

  2020cites this paper
• Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems

  2019cites this paper
• Multifactorial Inheritance and Complex Diseases

  2019cites this paper
• Plant–Microbe Interaction: Gene-to-Metabolite Network

  2019cites this paper
• ResponseNet v.3: revealing signaling and regulatory pathways connecting your proteins and genes across human tissues

  2019cites this paper
• Using network inference to discover molecular pathways underlying cytokine synergism and age-related neurodegeneration

  2018cites this paper
• Leveraging Multilayered “Omics” Data for Atopic Dermatitis: A Road Map to Precision Medicine

  2018cites this paper
• Integrated omics analysis of specialized metabolism in medicinal plants.

  2017cites this paper
• Translational Systems Pharmacology Studies in Pregnant Women

  2017cites this paper
• A Systemic Analysis of Transcriptomic and Epigenomic Data To Reveal Regulation Patterns for Complex Disease

  2017cites this paper
• Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package

  2016cites this paper
• Pathway-based network modeling finds hidden genes in shRNA screen for regulators of acute lymphoblastic leukemia† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c6ib00040a Click here for additional data file. Click here for additional data file.

  2016cites this paper
• Systems biology approaches to study the molecular effects of caloric restriction and polyphenols on aging processes

  2015cites this paper
• Genomic, Proteomic, and Metabolomic Data Integration Strategies

  2015cites this paper
• Molecular Phenotyping in Drug Discovery and Pharmaceutical Research

  2015cites this paper
• Supplementary Issue: Gene and Protein Expression Profiling in Disease

  2015cites this paper