A simplified implementation of the bubble analysis of biopolymer network pores.

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Biophysical Journal

• Publication date

  2013-06-18

• Fields of study

  Biology, Mathematics, Materials Science, Medicine

• Identifiers
  DOI 10.1016/j.bpj.2013.05.016PMID 23790386PMCID PMC3686353
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Fast two-dimensional bubble analysis of biopolymer filamentous networks pore size from confocal microscopy thin data stacks.

  2013cited by this paper
• NEMO: a tool for analyzing gene and chromosome territory distributions from 3D-FISH experiments

  2010cited by this paper
• Robust pore size analysis of filamentous networks from three-dimensional confocal microscopy.

  2008cited by this paper
• Glioma expansion in collagen I matrices: analyzing collagen concentration-dependent growth and motility patterns.

  2005cited by this paper

• Nonlinear Relationships of Fibrin Network Structure as a Function of Fibrinogen and Thrombin Concentrations for Purified Fibrinogen and Plasma Clots

  2026cites this paper
• Data-driven multiscale design of composite biomaterials: Integrating experiments, imaging, and computational modeling for biomedical engineering.

  2026cites this paper
• Effect of Alpha2-Plasmin Inhibitor C-Terminal Heterogeneity on Clot Lysis and Clot Structure

  2025cites this paper
• Automated analysis of pore structures in biomaterials.

  2025cites this paper
• Compression injury regulates astrocyte morphology, metabolic function, and extracellular matrix modification in a 3D hydrogel

  2025cites this paper
• Compression-Tension-Asymmetry and Stiffness Nonlinearity of Collagen-Matrigel Composite Hydrogels.

  2025cites this paper
• Tuning collagen nonlinear mechanics with interpenetrating networks drives adaptive cellular phenotypes in three dimensions

  2025cites this paper
• Protofibril packing density of individual fibers alters fibrinolysis

  2025cites this paper
• Unveiling the structure of protein-based hydrogels by overcoming cryo-SEM sample preparation challenges.

  2025cites this paper
• Vimentin promotes collective cell migration through collagen networks via increased matrix remodeling and spheroid fluidity

  2024cites this paper
• EMT-dependent cell-matrix interactions are linked to unjamming transitions in cancer spheroid invasion

  2024cites this paper
• EMT-related cell-matrix interactions are linked to states of cell unjamming in cancer spheroid invasion

  2024cites this paper
• Flow affects the structural and mechanical properties of the fibrin network in plasma clots

  2024cites this paper
• Fibrin clots from patients with acute-on-chronic liver failure are weaker than those of healthy individuals and patients with sepsis without underlying liver disease.

  2023cites this paper
• What is the diameter of a fibrin fiber?

  2023cites this paper
• Evaluation of techniques used for visualisation of hydrogel morphology and determination of pore size distributions

  2023cites this paper
• A systematic review and comparison of automated tools for quantification of fibrous networks

  2022cites this paper
• The interplay between matrix deformation and the coordination of turning events governs directed neutrophil migration in 3D matrices

  2021cites this paper
• Structural characterization of fibrous synthetic hydrogels using fluorescence microscopy.

  2020cites this paper
• A balance between matrix deformation and the coordination of turning events governs directed neutrophil migration in 3-D matrices

  2020cites this paper
• Inhomogeneities in 3D Collagen Matrices Impact Matrix Mechanics and Cancer Cell Migration

  2020cites this paper
• Image analysis method for heterogeneity and porosity characterization of biomimetic hydrogels

  2020cites this paper
• Prestress and Area Compressibility of Actin Cortices Determine the Viscoelastic Response of Living Cells.

  2020cites this paper
• Fast and reliable advanced two-step pore-size analysis of biomimetic 3D extracellular matrix scaffolds

  2019cites this paper
• Breast Cancer Cells Adapt Contractile Forces to Overcome Steric Hindrance.

  2019cites this paper
• Collagen networks determine viscoelastic properties of connective tissues yet do not hinder diffusion of the aqueous solvent.

  2019cites this paper
• Fibrinography: A Multiwavelength Light-Scattering Assay of Fibrin Structure

  2019cites this paper
• Analyse de la structure du caillot en conditions physiologiques et pathologiques

  2019cites this paper
• Aggregates dramatically alter fibrin ultrastructure

  2018cites this paper
• Rheology of Membrane-Attached Minimal Actin Cortices.

  2018cites this paper
• Fibrin structural and diffusional analysis suggests that fibers are permeable to solute transport.

  2017cites this paper
• Pore‐scale water dynamics during drying and the impacts of structure and surface wettability

  2017cites this paper
• Programming the mechanics of cohesive ber networks by compression Supplementary Information

  2017cites this paper
• UvA-DARE (Digital Academic Repository) Porosity governs normal stresses in polymer gels

  2016cites this paper
• UvA-DARE (Digital Academic Repository) Porosity governs normal stresses in polymer gels

  2016cites this paper
• UvA-DARE (Digital Academic Repository) Porosity governs normal stresses in polymer gels

  2016cites this paper
• UvA-DARE (Digital Academic Repository) Porosity governs normal stresses in polymer gels

  2016cites this paper
• UvA-DARE (Digital Academic Repository) Porosity governs normal stresses in polymer gels Porosity governs normal stresses in polymer gels Supplementary Information Influence of rheometer shear cell the normal stress

  2016cites this paper
• Porosity Governs Normal Stresses in Polymer Gels.

  2016cites this paper
• Programming filamentous network mechanics by compression

  2016cites this paper
• Modelling porosity and permeability in early cemented carbonates

  2016cites this paper
• a novel method for standardized micro- computed-tomography- guided evaluation of scaffold properties in bone and tissue research

  2016cites this paper
• Fibrous nonlinear elasticity enables positive mechanical feedback between cells and ECMs

  2016cites this paper
• UvA-DARE (Digital Academic Repository) Porosity governs normal stresses in polymer gels

  2016cites this paper
• Quantifying Modes of 3D Cell Migration.

  2015cites this paper
• Heidelberg-mCT-Analyzer: a novel method for standardized microcomputed-tomography-guided evaluation of scaffold properties in bone and tissue research

  2015influential citation
• Biphasic response of cell invasion to matrix stiffness in three-dimensional biopolymer networks.

  2015cites this paper
• Size and Density of Fibers in Fibrin and Other Filamentous Networks from Turbidimetry: Beyond a Revisited Carr−Hermans Method, Accounting for Fractality and Porosity

  2015cites this paper
• Non-Enzymatic Remodeling of Fibrin Biopolymers via Photothermally Triggered Radical-Generating Nanoparticles

  2014cites this paper
• Mechanistic adaptability of cancer cells strongly affects anti-migratory drug efficacy

  2014cites this paper
• Response to "a simplified implementation of the bubble analysis of biopolymer networks pores".

  2013cites this paper
• Estimating the 3D pore size distribution of biopolymer networks from directionally biased data.

  2013cites this paper