In silico targeted genome mining and comparative modelling reveals a putative protein similar to an Arabidopsis drought tolerance DNA binding transcription factor in Chromosome 6 of Sorghum bicolor genome

No abstract is available for this paper.

• Publication year

  2012

• Venue

  Interdisciplinary Sciences Computational Life Sciences

• Publication date

  2012-06-01

• Fields of study

  Biology, Medicine, Computer Science, Environmental Science

• Identifiers
  DOI 10.1007/s12539-012-0121-1PMID 22843236
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Comparative transcriptome analysis of AP2/EREBP gene family under normal and hormone treatments, and under two drought stresses in NILs setup by Aday Selection and IR64

  2011cited by this paper
• Overexpression of HARDY, an AP2/ERF gene from Arabidopsis, improves drought and salt tolerance by reducing transpiration and sodium uptake in transgenic Trifolium alexandrinum L.

  2011cited by this paper
• Modelling the Molecular Interactions in the Flower Developmental Network of Arabidopsis thaliana

  2010cited by this paper
• Protein-coding and non-coding gene expression analysis in differentiating human keratinocytes using a three-dimensional epidermal equivalent

  2010cited by this paper
• QMEAN server for protein model quality estimation

  2009cited by this paper
• In vitro Reconstitution of an ABA Signaling Pathway

  2009cited by this paper
• Genome-wide analysis of the putative AP2/ERF family genes in Vitis vinifera.

  2009cited by this paper
• Protein folding and binding: moving into unchartered territory.

  2009cited by this paper
• Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses1

  2009cited by this paper
• Linking folding and binding.

  2009cited by this paper
• The Sorghum bicolor genome and the diversification of grasses

  2009cited by this paper
• Can GM sorghum impact Africa?

  2008cited by this paper
• Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.

  2008cited by this paper
• Advances of calcium signals involved in plant anti-drought.

  2008cited by this paper
• Protein structure homology modeling using SWISS-MODEL workspace

  2008cited by this paper
• Protein disorder is positively correlated with gene expression in Escherichia coli.

  2008cited by this paper
• Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene

  2007cited by this paper
• TFmodeller: comparative modelling of protein-DNA complexes

  2007cited by this paper
• MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

  2007cited by this paper
• Phylogeny and domain evolution in the APETALA2-like gene family.

  2006cited by this paper
• Expression analysis of a stress-modulated transcript in drought tolerant and susceptible cultivars of sorghum (Sorghum bicolor).

  2006cited by this paper
• SCHIP: statistics for chromosome interphase positioning based on interchange data

  2005cited by this paper
• The interplay between structure and function in intrinsically unstructured proteins

  2005cited by this paper
• ProFunc: a server for predicting protein function from 3D structure

  2005cited by this paper
• Sorghum bicolor’s Transcriptome Response to Dehydration, High Salinity and ABA

  2005cited by this paper
• Sorghum Expressed Sequence Tags Identify Signature Genes for Drought, Pathogenesis, and Skotomorphogenesis from a Milestone Set of 16,801 Unique Transcripts1[w]

  2005cited by this paper
• Protein homology detection by HMM?CHMM comparison

  2005cited by this paper
• From Endonucleases to Transcription Factors: Evolution of the AP2 DNA Binding Domain in Plantsw⃞

  2004cited by this paper
• Evidence for Serine/Threonine and Histidine Kinase Activity in the Tobacco Ethylene Receptor Protein NTHK21

  2004cited by this paper
• Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs

  2003cited by this paper
• Modulation of DNA-binding domains for sequence-specific DNA recognition.

  2003cited by this paper
• Protein disorder prediction: implications for structural proteomics.

  2003cited by this paper
• Multiple sequence alignment with the Clustal series of programs

  2003cited by this paper
• MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison

  2002cited by this paper
• Mapping QTLs associated with drought resistance in sorghum (Sorghum bicolor L. Moench)

  2002cited by this paper
• Sorghum bicolor - an important species for comparative grass genomics and a source of beneficial genes for agriculture.

  2002cited by this paper
• InterProScan - an integration platform for the signature-recognition methods in InterPro

  2001cited by this paper
• Effect of water stress on cell division and cell-division-cycle 2-like cell-cycle kinase activity in wheat leaves

  1998cited by this paper
• VERIFY3D: assessment of protein models with three-dimensional profiles.

  1997cited by this paper

• Role of omics for enhancing abiotic stress resilience in sorghum (Sorghum bicolor L. Moench)

  2025cites this paper
• Functional insight into multi-omics-based interventions for climatic resilience in sorghum (Sorghum bicolor): a nutritionally rich cereal crop

  2024cites this paper
• CerealESTDb: A Comprehensive Resource for Abiotic Stress-Responsive Annotated ESTs With Predicted Genes, Gene Ontology, and Metabolic Pathways in Major Cereal Crops

  2022cites this paper
• Drought and High Temperature Stress in Sorghum: Physiological, Genetic, and Molecular Insights and Breeding Approaches

  2021cites this paper
• GENOME–WIDE ANALYSIS OF ETHYLENE RESPONSIVE FACTOR IN MAIZE: AN IN SILICO APPROACH

  2016cites this paper
• GENOME – WIDE ANALYSIS OF ETHYLENE RESPONSIVE FACTOR IN MAIZE : AN IN SILICO APPROACH

  2016cites this paper
• MOLECULAR BEACON PROBE BASED PROMOTER MOTIFS VALIDATION IN ANOXIA RESPONSIVE DIFFERENTIALLY EXPRESSED GENES AND THEIR IN SILICO INTERACTION STUDIES WITH AP2/EREBP TF IN RICE (ORYZA SATIVA L.)

  2015cites this paper
• Drought stress responses in crops

  2014cites this paper
• Functional Genomics of Drought Tolerance in Bioenergy Crops

  2014cites this paper