In silico analysis on structure and DNA binding mode of AtNAC1, a NAC transcription factor from Arabidopsis thaliana

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Journal of Molecular Modeling

• Publication date

  2014-02-26

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/s00894-014-2117-8PMID 24570356
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Database resources of the National Center for Biotechnology Information

  2014cited by this paper
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• The RCSB Protein Data Bank: redesigned web site and web services

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  2010cited by this paper
• Database resources of the National Center for Biotechnology Information

  2010cited by this paper
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  2004influential reference
• MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs.

  2004cited by this paper
• Evaluation of protein docking predictions using Hex 3.1 in CAPRI rounds 1 and 2

  2003cited by this paper
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  2003cited by this paper
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  2003cited by this paper
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  2002cited by this paper
• Molecular characterization of AtNAM: a member of theArabidopsis NAC domain superfamily

  2002cited by this paper
• Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development.

  2000influential reference
• Protein docking using spherical polar Fourier correlations

  2000cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997cited by this paper
• Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant.

  1997cited by this paper
• VERIFY3D: assessment of protein models with three-dimensional profiles.

  1997cited by this paper
• Thirty years of environmental health research--and growing.

  1996influential reference
• Comparative protein modeling by satisfaction of spatial restraints.

  1996influential reference
• The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries.

  1996cited by this paper
• Comparative protein modeling by satisfaction of spatial restraints

  1995cited by this paper
• Molecular Dynamics Simulations on Solvated Biomolecular Systems: The Particle Mesh Ewald Method Leads to Stable Trajectories of DNA, RNA, and Proteins

  1995cited by this paper
• PROCHECK: a program to check the stereochemical quality of protein structures

  1993cited by this paper
• Verification of protein structures: Patterns of nonbonded atomic interactions

  1993influential reference
• CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

  1983cited by this paper
• ALGORITHMS FOR MACROMOLECULAR DYNAMICS AND CONSTRAINT DYNAMICS

  1977cited by this paper
• Mathematical Methods for Physicists

  1967cited by this paper
• Function minimization by conjugate gradients

  1964cited by this paper

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  2019cites this paper
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  2018influential citation
• NAC Transcription Factors in Woody Plants

  2018cites this paper
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  2016cites this paper
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  2016cites this paper
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  2016cites this paper
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  2015influential citation
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  2015cites this paper
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  2014cites this paper