Crystal structures of a meta‐cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products

No abstract is available for this paper.

• Publication year

  2002

• Venue

  Protein Science

• Publication date

  2002-09-01

• Fields of study

  Biology, Medicine, Chemistry, Environmental Science

• Identifiers
  DOI 10.1110/ps.0209602PMID 12192074PMCID PMC2373588
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Isopropylbenzene catabolic pathway in Pseudomonas putida RE204: nucleotide sequence analysis of the ipb operon and neighboring DNA from pRE4

  2004influential reference
• Purification, characterization, and steady-state kinetics of a meta-cleavage compound hydrolase from Pseudomonas fluorescens IPO1.

  2002cited by this paper
• Crystal structure of 2-hydroxyl-6-oxo-6-phenylhexa-2,4-dienoic acid (HPDA) hydrolase (BphD enzyme) from the Rhodococcus sp. strain RHA1 of the PCB degradation pathway.

  2001cited by this paper
• Comparative Specificities of Two Evolutionarily Divergent Hydrolases Involved in Microbial Degradation of Polychlorinated Biphenyls

  2001cited by this paper
• Catalytic mechanism of a C-C hydrolase enzyme: evidence for a gem-diol intermediate, not an acyl enzyme.

  2000cited by this paper
• Toluene degradation pathway from Pseudomonas putida F1: substrate specificity and gene induction by 1-substituted benzenes

  2000cited by this paper
• Identification of a Serine Hydrolase Which Cleaves the Alicyclic Ring of Tetralin

  2000cited by this paper
• Recent changes to RasMol, recombining the variants.

  2000influential reference
• Identification of a Serine Hydrolase as a Key Determinant in the Microbial Degradation of Polychlorinated Biphenyls*

  2000cited by this paper
• The Rossmann Fourier autoindexing algorithm in MOSFLM.

  1999cited by this paper
• Of barn owls and bankers: a lush variety of alpha/beta hydrolases.

  1999cited by this paper
• ESPript: analysis of multiple sequence alignments in PostScript

  1999influential reference
• XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density.

  1999influential reference
• Alpha/beta hydrolase fold enzymes: the family keeps growing.

  1999cited by this paper
• Of barn owls and bankers: a lush variety of α/β hydrolases

  1999cited by this paper
• α/β Hydrolase fold enzymes : the family keeps growing

  1999cited by this paper
• Kirk-Othmer concise encyclopedia of chemical technology

  1999cited by this paper
• Two Nearly Identical Aromatic Compound Hydrolase Genes in a Strong Polychlorinated Biphenyl Degrader,Rhodococcus sp. Strain RHA1

  1998influential reference
• Purification and Preliminary Characterization of a Serine Hydrolase Involved in the Microbial Degradation of Polychlorinated Biphenyls*

  1998cited by this paper
• Crystallography & NMR system: A new software suite for macromolecular structure determination.

  1998influential reference
• [20] Processing of X-ray diffraction data collected in oscillation mode.

  1997cited by this paper
• Raster3D: photorealistic molecular graphics.

  1997influential reference
• Processing of X-ray diffraction data collected in oscillation mode.

  1997cited by this paper
• Pre-steady-state kinetic analysis of 2-hydroxy-6-keto-nona-2,4-diene-1,9-dioic acid 5,6-hydrolase: kinetic evidence for enol/keto tautomerization.

  1997cited by this paper
• β-Ketolases-forgotten hydrolytic enzymes?

  1997cited by this paper
• Purification, characterization, and stereochemical analysis of a C-C hydrolase: 2-hydroxy-6-keto-nona-2,4-diene-1,9-dioic acid 5,6-hydrolase.

  1997cited by this paper
• An Algorithm for Automatic Indexing of Oscillation Images using Fourier Analysis

  1997cited by this paper
• The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

  1997cited by this paper
• MOLREP: an Automated Program for Molecular Replacement

  1997cited by this paper
• Cloning, nucleotide sequence, and characterization of the genes encoding enzymes involved in the degradation of cumene to 2-hydroxy-6-oxo-7-methylocta-2,4-dienoic acid in Pseudomonas fluorescens IP01

  1996cited by this paper
• Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01

  1996cited by this paper
• Cloning and nucleotide sequences of the genes involved in the meta-cleavage pathway of cumene degradation in Pseudomonas fluorescens IP01

  1996cited by this paper
• Conversion of chlorobiphenyls into phenylhexadienoates and benzoates by the enzymes of the upper pathway for polychlorobiphenyl degradation encoded by the bph locus of Pseudomonas sp. strain LB400

  1995cited by this paper
• LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions.

  1995influential reference
• Designing microorganisms for the treatment of toxic wastes.

  1994cited by this paper
• AMoRe: an automated package for molecular replacement

  1994cited by this paper
• Gene components responsible for discrete substrate specificity in the metabolism of biphenyl (bph operon) and toluene (tod operon)

  1993cited by this paper
• The alpha/beta hydrolase fold.

  1992cited by this paper
• Molecular mechanisms of genetic adaptation to xenobiotic compounds

  1992cited by this paper
• The α/β hydrolase fold

  1992cited by this paper
• Aromatic hydrocarbon degradation: a molecular approach.

  1991cited by this paper
• Improved methods for building protein models in electron density maps and the location of errors in these models.

  1991cited by this paper
• Location and sequence of the todF gene encoding 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase in Pseudomonas putida F1.

  1991influential reference
• A program to produce both detailed and schematic plots of protein structures

  1991influential reference
• Influence of chroline substitution pattern on the degradation of polychlorinated biphenyls by eight bacterial strains

  1990cited by this paper
• CHAPTER 15 – Biochemistry of Aromatic Hydrocarbon Degradation in Pseudomonads

  1986influential reference
• Purification and some properties of a 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid hydrolyzing enzyme from Pseudomonas cruciviae S93 B1 involved in the degradation of biphenyl

  1986cited by this paper
• Cloning of a gene cluster encoding biphenyl and chlorobiphenyl degradation in Pseudomonas pseudoalcaligenes

  1986influential reference
• Kirk-Othmer Concise encyclopedia of chemical technology

  1985cited by this paper
• Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features

  1983cited by this paper
• PRIORITY POLLUTANTS I-A PERSPECTIVES VIEW

  1979cited by this paper
• Effect of chlorine substitution on the bacterial metabolism of various polychlorinated biphenyls

  1979cited by this paper
• Enzymes. 3rd ed

  1979influential reference
• Sedimentary Polycyclic Aromatic Hydrocarbons: The Historical Record

  1977cited by this paper
• Polycyclic Aromatic Hydrocarbons in Soils and Recent Sediments

  1975cited by this paper
• Enzymes

  1951influential reference

• EP-Pred: A Machine Learning Tool for Bioprospecting Promiscuous Ester Hydrolases

  2022cites this paper
• Molecular and functional basis of a novel Amazonian Dark Earth Esterase 1 (Ade1) with hysteresis behavior and quorum-quenching activity

  2020cites this paper
• Serine and Metal-Dependent meta-Cleavage Product Hydrolases

  2019cites this paper
• Structural properties and role of the endocannabinoid lipases ABHD6 and ABHD12 in lipid signalling and disease

  2018cites this paper
• The Topology, Regulation, and Function of Cardiolipin Remodeling in Saccharomyces cerevisiae

  2014cites this paper
• Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the α/β hydrolase family.

  2013cites this paper
• University of Groningen Crystal structures of two Bacillus carboxylesterases with different enantioselectivities

  2013cites this paper
• The key role of a non-active-site residue Met148 on the catalytic efficiency of meta-cleavage product hydrolase BphD

  2013cites this paper
• The lid domain of the MCP hydrolase DxnB2 contributes to the reactivity toward recalcitrant PCB metabolites.

  2013cites this paper
• Tuning the substrate selectivity of meta-cleavage product hydrolase by domain swapping

  2013cites this paper
• Investigating the catalytic mechanism of the meta-cleavage product hydrolases

  2013influential citation
• Deacylation on the matrix side of the mitochondrial inner membrane regulates cardiolipin remodeling

  2013cites this paper
• Metabolic characterization and genes for the conversion of biphenyl in Dyella ginsengisoli LA-4.

  2012cites this paper
• Role of the NC-Loop in Catalytic Activity and Stability in Lipase from Fervidobacterium changbaicum

  2012cites this paper
• Adaptation Of Pseudomonas Putida F1 To Growth On Styrene

  2011cites this paper
• Growth of Pseudomonas putida F1 on styrene requires increased catechol-2,3-dioxygenase activity, not a new hydrolase.

  2011cites this paper
• A product analog bound form of 3-oxoadipate-enol-lactonase (PcaD) reveals a multifunctional role for the divergent cap domain.

  2011cites this paper
• ESTUDO DA ROTA DE DEGRADAÇÃO DO CARBAZOL EM MEIO BIFÁSICO UTILIZANDO A BACTÉRIA Sphingomonas sp. GTIN11

  2010cites this paper
• Characterization of a novel meta-fission product hydrolase from Dyella ginsengisoli LA-4

  2010cites this paper
• Dioxygenase Enzymes and Oxidative Cleavage Pathways

  2010cites this paper
• Comparative Analysis of the Physiological and Structural Properties of a Medium Chain Length Polyhydroxyalkanoate Depolymerase from Pseudomonas putida KT2442

  2008cites this paper
• Biodegradation of Aromatic Compounds: An Overview of Meta-Fission Product Hydrolases

  2008influential citation
• The Tautomeric Half-reaction of BphD, a C-C Bond Hydrolase

  2007cites this paper
• Characterization of a C—C Bond Hydrolase from Sphingomonas wittichii RW1 with Novel Specificities towards Polychlorinated Biphenyl Metabolites

  2007influential citation
• The pydA–pydB fusion gene produces an active dioxygenase–hydrolase that degrades 3-hydroxy-4-pyridone, an intermediate of mimosine metabolism

  2007cites this paper
• Mutational analysis and homology modelling of SyrC, the aminoacyltransferase in the biosynthesis of syringomycin.

  2007cites this paper
• Biochemical Evidence That phaZ Gene Encodes a Specific Intracellular Medium Chain Length Polyhydroxyalkanoate Depolymerase in Pseudomonas putida KT2442

  2007cites this paper
• Structure and action of a C-C bond cleaving alpha/beta-hydrolase involved in nicotine degradation.

  2007cites this paper
• Structure and Action of a CC Bond Cleaving α/β-Hydrolase Involved in Nicotine Degration

  2007cites this paper
• Evidence for a gem-diol reaction intermediate in bacterial C-C hydrolase enzymes BphD and MhpC from 13C NMR spectroscopy.

  2006cites this paper
• A novel meta-cleavage product hydrolase from Flavobacterium sp. ATCC27551.

  2006cites this paper
• Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01.

  2006cites this paper
• Kinetic and structural insight into the mechanism of BphD, a C-C bond hydrolase from the biphenyl degradation pathway.

  2006influential citation
• The structure of the C-C bond hydrolase MhpC provides insights into its catalytic mechanism.

  2005cites this paper
• A Series of Crystal Structures of a meta-Cleavage Product Hydrolase from Pseudomonas fluorescens IP01 (CumD) Complexed with Various Cleavage Products

  2005cites this paper
• Crystal Structure of the Terminal Oxygenase Component of Cumene Dioxygenase from Pseudomonas fluorescens IP01

  2005cites this paper
• Cloning, expression and characterization of a lipase gene (lip3) from Pseudomonas aeruginosa LST-03

  2004cites this paper
• Structure and specificity of a human valacyclovir activating enzyme: a homology model of BPHL.

  2004cites this paper
• Crystal structure of a histidine-tagged serine hydrolase involved in the carbazole degradation (CarC enzyme).

  2003cites this paper
• Purification and Characterization of meta-Cleavage Compound Hydrolase from a Carbazole Degrader Pseudomonas resinovorans Strain CA10

  2003cites this paper