Computational prediction of non-enzymatic RNA degradation patterns.

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Acta Biochimica Polonica

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.18388/abp.2016_1331PMID 27755613
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2014influential reference
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• The Nonenzymatic Hydrolysis of Oligoribonucleotides VII. Structural Elements Affecting Hydrolysis

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  1998cited by this paper
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  1995cited by this paper
• mRNA stability in mammalian cells.

  1995cited by this paper
• Sequence-specific hydrolysis of yeast tRNA(Phe) mediated by metal-free bleomycin.

  1995cited by this paper
• Fast folding and comparison of RNA secondary structures

  1994influential reference
• Nonenzymatic hydrolysis of oligoribonucleotides.

  1992influential reference
• A trinucleotide can promote metal ion-dependent specific cleavage of RNA.

  1992cited by this paper
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