Phylogenetic relationships and biogeography of the Japanese clawed salamander, Onychodactylus japonicus (Amphibia: Caudata: Hynobiidae), and its congener inferred from the mitochondrial cytochrome b gene.

No abstract is available for this paper.

• Publication year

  2008

• Venue

  Molecular Phylogenetics and Evolution

• Publication date

  2008-10-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/j.ympev.2008.07.016PMID 18713651
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2007influential reference
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  2006influential reference
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  2006influential reference
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  2005cited by this paper
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  2004cited by this paper
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  2004cited by this paper
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  2003cited by this paper
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  2003cited by this paper
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  2003cited by this paper
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  2003cited by this paper
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  2002cited by this paper
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  2002cited by this paper
• MRBAYES: Bayesian inference of phylogenetic trees

  2001influential reference
• Molecular phylogenetics and historical biogeography among salamandrids of the "true" salamander clade: rapid branching of numerous highly divergent lineages in Mertensiella luschani associated with the rise of Anatolia.

  2001influential reference
• Allozymic variation of Hynobius kimurae Dunn (Amphibia, Caudata).

  2000cited by this paper
• Atlas of amphibians of China.

  1999cited by this paper
• Molecular systematics of fishes

  1998cited by this paper
• MODELTEST: testing the model of DNA substitution

  1998cited by this paper
• CHAPTER 8 – Fish Biogeography and Molecular Clocks: Perspectives from the Panamanian Isthmus

  1997influential reference
• The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

  1997influential reference
• Nucleic acids IV : Sequencing and cloning

  1996cited by this paper
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  1995cited by this paper
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  1994cited by this paper
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  1993cited by this paper
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  1993cited by this paper
• Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

  1993cited by this paper
• Migration and breeding cycle of Onychodactylus japonicus on Mt. Hodatsu

  1991cited by this paper
• Frogs and Toads of Japan

  1990cited by this paper
• The general stochastic model of nucleotide substitution.

  1990cited by this paper
• Genetic differentiation within and between two local races of the japanese newt, Cynops pyrrhogaster, in eastern Japan

  1990cited by this paper
• Evolution of Tertiary sedimentary basins of Japan in reference to opening of the Japan Sea

  1990influential reference
• Studies on Chinese Salamanders

  1988cited by this paper
• CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP

  1985cited by this paper
• LIFE HISTORY DURING THE AQUATIC LIFE PERIOD OF A SALAMANDER, ONYCHODACTYLUS JAPONICUS (HOUTTUYN), AT MTS. TSUKUBA, IBARAKI, JAPAN

  1982cited by this paper
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  1980cited by this paper
• A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

  1980influential reference
• Quaternary tectonism in the Pacific side of central Japan

  1980cited by this paper
• 箱根山椒魚(Onychodactylus japonicus,Houttuyn)の聽器に関する発生学的研究

  1937cited by this paper
• HERPETOLOGY OF JAPAN AND ADJACENT TERRITORY

  1907cited by this paper
• Zur Anatomie des Hyobranchialskeletes bei den Onychodactylusl arven.

  year unknowncited by this paper
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  year unknowncited by this paper

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