Inferring Phylogenomic Relationship of Microbes Using Scalable Alignment-Free Methods.

No abstract is available for this paper.

• Publication year

  2021

• Venue

  Methods in molecular biology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Computer Science, Environmental Science

• Identifiers
  DOI 10.1007/978-1-0716-1099-2_5PMID 33961218
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Benchmarking of alignment-free sequence comparison methods

  2019cited by this paper
• NGPhylogeny.fr: new generation phylogenetic services for non-specialists

  2019cited by this paper
• Alignment-Free Sequence Analysis and Applications.

  2018cited by this paper
• MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

  2018cited by this paper
• k-mer Similarity, Networks of Microbial Genomes, and Taxonomic Rank

  2017cited by this paper
• Alignment-free inference of hierarchical and reticulate phylogenomic relationships

  2017cited by this paper
• Alignment-free sequence comparison: benefits, applications, and tools

  2017cited by this paper
• Recapitulating phylogenies using k-mers: from trees to networks

  2016cited by this paper
• Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer

  2016cited by this paper
• PhySortR: a fast, flexible tool for sorting phylogenetic trees in R

  2016cited by this paper
• Recapitulating phylogenies using k-mers: from trees to networks.

  2016cited by this paper
• Inferring phylogenies of evolving sequences without multiple sequence alignment

  2014cited by this paper
• Alignment-free genetic sequence comparisons: a review of recent approaches by word analysis

  2014cited by this paper
• New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing

  2014cited by this paper
• Next-generation phylogenomics

  2013cited by this paper
• Answering biological questions by querying k‐mer databases

  2013cited by this paper
• Alignment methods: strategies, challenges, benchmarking, and comparative overview.

  2012cited by this paper
• Accounting For Alignment Uncertainty in Phylogenomics

  2012cited by this paper
• Alignment-Free Sequence Comparison (II): Theoretical Power of Comparison Statistics

  2010cited by this paper
• Using jackknife to assess the quality of gene order phylogenies

  2010cited by this paper
• Alignment-Free Sequence Comparison (I): Statistics and Power

  2009cited by this paper
• Alignment Uncertainty and Genomic Analysis

  2008cited by this paper
• Recent Evolutions of Multiple Sequence Alignment Algorithms

  2007cited by this paper
• Cytoscape: a software environment for integrated models of biomolecular interaction networks.

  2003cited by this paper
• Phylogeny estimation: traditional and Bayesian approaches

  2003cited by this paper
• The jackknife-a review

  1974cited by this paper

• Estimating Genome-Wide Phylogenies Using Probabilistic Topic Modeling

  2025cites this paper
• The genome of a giant clam zooxanthella (Cladocopium infistulum) offers few clues to adaptation as an extracellular symbiont with high thermotolerance

  2024cites this paper
• A k-mer-based approach for phylogenetic classification of taxa in environmental genomic data.

  2023cites this paper
• Comparative study of encoded and alignment-based methods for virus taxonomy classification

  2023cites this paper
• Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts.

  2022cites this paper
• Alignment-Free Analysis of Whole-Genome Sequences From Symbiodiniaceae Reveals Different Phylogenetic Signals in Distinct Regions

  2022cites this paper