p‐Coumaric acid decarboxylase from Lactobacillus plantarum: Structural insights into the active site and decarboxylation catalytic mechanism

No abstract is available for this paper.

• Publication year

  2010

• Venue

  Proteins: Structure, Function, and Bioinformatics

• Publication date

  2010-05-15

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1002/prot.22684PMID 20112419
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Protein Dynamism and Evolvability

  2009cited by this paper
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  2009cited by this paper
• Characterization of the p-coumaric acid decarboxylase from Lactobacillus plantarum CECT 748(T).

  2008cited by this paper
• Active-site mobility revealed by the crystal structure of arylmalonate decarboxylase from Bordetella bronchiseptica.

  2008cited by this paper
• Lignin engineering.

  2008cited by this paper
• Structure‐based thermodynamic analysis of the dissociation of protein phosphatase‐1 catalytic subunit and microcystin‐LR docked complexes

  2008cited by this paper
• MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

  2007cited by this paper
• Overexpression, purification, crystallization and preliminary structural studies of p-coumaric acid decarboxylase from Lactobacillus plantarum.

  2007influential reference
• Inference of macromolecular assemblies from crystalline state.

  2007cited by this paper
• Protein design: reengineering cellular retinoic acid binding protein II into a rhodopsin protein mimic.

  2007cited by this paper
• Crystal structure of alpha-amino-beta-carboxymuconate-epsilon-semialdehyde decarboxylase: insight into the active site and catalytic mechanism of a novel decarboxylation reaction.

  2006cited by this paper
• Lignin primary structures and dirigent sites.

  2005cited by this paper
• Phonolic components of the primary cell wall and their possible rôle in the hormonal regulation of growth

  2004cited by this paper
• Structural and biochemical characterization of toad liver fatty acid-binding protein.

  2003cited by this paper
• A Compact and Lipophilic Enantiomer Showing a Bilayer Crystal Structure − Free Energy of Spontaneous Resolution of the Racemic Compound into the Crystalline Enantiomers

  2003cited by this paper
• New insights into the structure and function of fatty acid-binding proteins

  2002cited by this paper
• The PyMOL Molecular Graphics System

  2002cited by this paper
• Knockout of the p-Coumarate Decarboxylase Gene from Lactobacillus plantarum Reveals the Existence of Two Other Inducible Enzymatic Activities Involved in Phenolic Acid Metabolism

  2000cited by this paper
• Genetic Analysis of a Chromosomal Region ContainingvanA and vanB, Genes Required for Conversion of Either Ferulate or Vanillate to Protocatechuate inAcinetobacter

  1999cited by this paper
• Automated analysis of interatomic contacts in proteins

  1999cited by this paper
• Automated protein model building combined with iterative structure refinement

  1999cited by this paper
• The Genetic Code: What Is It Good For? An Analysis of the Effects of Selection Pressures on Genetic Codes

  1999cited by this paper
• Structural properties of the adipocyte lipid binding protein.

  1999cited by this paper
• Liver fatty acid binding protein: species variation and the accommodation of different ligands.

  1999cited by this paper
• Gene Cloning, Transcriptional Analysis, Purification, and Characterization of Phenolic Acid Decarboxylase from Bacillus subtilis

  1998cited by this paper
• Stereochemically specific proton transfer in decarboxylation of 4-hydroxycinnamic acids by 4-hydroxycinnamate decarboxylase from Klebsiella oxytoca.

  1998cited by this paper
• Crystallography & NMR system: A new software suite for macromolecular structure determination.

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  1998cited by this paper
• Genetics of ferulic acid bioconversion to protocatechuic acid in plant-growth-promoting Pseudomonas putida WCS358.

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• The faeA genes from Aspergillus niger and Aspergillus tubingensis encode ferulic acid esterases involved in degradation of complex cell wall polysaccharides

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  1997cited by this paper
• Molecular characterization of an inducible p-coumaric acid decarboxylase from Lactobacillus plantarum: gene cloning, transcriptional analysis, overexpression in Escherichia coli, purification, and characterization

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  1997cited by this paper
• MOLREP: an Automated Program for Molecular Replacement

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• Genetic evidence for direct sensing of phenolic compounds by the VirA protein of Agrobacterium tumefaciens.

  1995cited by this paper
• PAD1 encodes phenylacrylic acid decarboxylase which confers resistance to cinnamic acid in Saccharomyces cerevisiae.

  1994cited by this paper
• Lipid-binding proteins: a family of fatty acid and retinoid transport proteins.

  1994cited by this paper
• Searching protein structure databases has come of age

  1994cited by this paper
• The CCP4 suite: programs for protein crystallography.

  1994cited by this paper
• Esterases of xylan-degrading microorganisms: production, properties, and significance.

  1993cited by this paper
• PROCHECK: a program to check the stereochemical quality of protein structures

  1993cited by this paper
• Electrogenic L-malate transport by Lactobacillus plantarum: a basis for energy derivation from malolactic fermentation

  1991cited by this paper
• Improved methods for building protein models in electron density maps and the location of errors in these models.

  1991cited by this paper
• Phenolic constituents of plant cell walls and wall biodegradability.

  1989cited by this paper
• Sensory impact of volatile phenols on red wine aroma: influence of carbonic maceration and time of storage

  1989cited by this paper
• Effect of phenolic monomers on ruminal bacteria

  1986cited by this paper
• Decarboxylation of cinnamic acids by Saccharomyces cerevisiae

  1981cited by this paper
• Constitution and Biosynthesis of Lignin

  1968cited by this paper

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