Regulatory cis-elements are located in accessible promoter regions of the CAT2 promoter and affect activating histone modifications in Arabidopsis thaliana

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Plant Molecular Biology

• Publication date

  2016-10-12

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/s11103-016-0546-8PMID 27734290
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A simple mechanism for the establishment of C₂-specific gene expression in Brassicaceae.

  2015cited by this paper
• Nucleosome organization in the vicinity of transcription factor binding sites in the human genome

  2014cited by this paper
• Mutation of Arabidopsis CATALASE2 results in hyponastic leaves by changes of auxin levels.

  2014cited by this paper
• Characteristic bimodal profiles of RNA polymerase II at thousands of active mammalian promoters

  2014cited by this paper
• Functional Analysis of Arabidopsis Mutants Points to Novel Roles for Glutathione in Coupling H2O2 to Activation of Salicylic Acid Accumulation and Signaling

  2013cited by this paper
• Methylation of Histone H3 on Lysine 4 by the Lysine Methyltransferase SET1 Protein Is Needed for Normal Clock Gene Expression*

  2013cited by this paper
• A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast.

  2012cited by this paper
• Genome-Wide RNA Polymerase II Profiles and RNA Accumulation Reveal Kinetics of Transcription and Associated Epigenetic Changes During Diurnal Cycles

  2012cited by this paper
• Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium

  2012cited by this paper
• Detection of Histone Modifications in Plant Leaves

  2011cited by this paper
• Determinants and dynamics of genome accessibility

  2011cited by this paper
• Structure and function of active chromatin and DNase I hypersensitive sites

  2011cited by this paper
• Determinants of nucleosome organization in primary human cells

  2011cited by this paper
• Relationship between nucleosome positioning and DNA methylation

  2010cited by this paper
• G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis1[W][OA]

  2010cited by this paper
• Functional comparison of catalase genes in the elimination of photorespiratory H2O2 using promoter- and 3'-untranslated region exchange experiments in the Arabidopsis cat2 photorespiratory mutant.

  2010cited by this paper
• A segment containing a G-box and an ACGT motif confers differential expression characteristics and responses to the Arabidopsis Cytc-2 gene, encoding an isoform of cytochrome c.

  2009cited by this paper
• What controls nucleosome positions?

  2009cited by this paper
• Mechanisms that specify promoter nucleosome location and identity.

  2009cited by this paper
• Dynamic regulation of nucleosome positioning in the human genome.

  2008cited by this paper
• Comprehensive functional analysis of the catalase gene family in Arabidopsis thaliana.

  2008cited by this paper
• Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis

  2007cited by this paper
• Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin.

  2007cited by this paper
• High-resolution profiling of histone methylations in the human genome.

  2007cited by this paper
• Conditional oxidative stress responses in the Arabidopsis photorespiratory mutant cat2 demonstrate that redox state is a key modulator of daylength-dependent gene expression, and define photoperiod as a crucial factor in the regulation of H2O2-induced cell death.

  2007cited by this paper
• A high-resolution atlas of nucleosome occupancy in yeast

  2007cited by this paper
• Arabidopsis GCN5, HD1, and TAF1/HAF2 Interact to Regulate Histone Acetylation Required for Light-Responsive Gene Expression

  2006cited by this paper
• Senescence-specific regulation of catalases in Arabidopsis thaliana (L.) Heynh.

  2006cited by this paper
• Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance.

  2006cited by this paper
• DNA methylation, nucleosome formation and positioning.

  2005cited by this paper
• Single-Nucleosome Mapping of Histone Modifications in S. cerevisiae

  2005cited by this paper
• Genome-Scale Identification of Nucleosome Positions in S. cerevisiae

  2005cited by this paper
• Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast.

  2005cited by this paper
• Athena: a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences

  2005cited by this paper
• Genome analysis Athena : a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences

  2005cited by this paper
• The key to development: interpreting the histone code?

  2005cited by this paper
• Redox Homeostasis and Antioxidant Signaling: A Metabolic Interface between Stress Perception and Physiological Responses

  2005cited by this paper
• Ordered Histone Modifications Are Associated with Transcriptional Poising and Activation of the phaseolin Promoter

  2005cited by this paper
• Evidence for nucleosome depletion at active regulatory regions genome-wide

  2004cited by this paper
• Construction of an intron-containing marker gene: Splicing of the intron in transgenic plants and its use in monitoring early events in Agrobacterium-mediated plant transformation

  2004cited by this paper
• The structure of DNA in the nucleosome core

  2003cited by this paper
• The Transcriptional Enhancer of the Pea Plastocyanin Gene Associates with the Nuclear Matrix and Regulates Gene Expression through Histone Acetylation Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.011825.

  2003cited by this paper
• PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences

  2002cited by this paper
• Role of DNA sequence in nucleosome stability and dynamics

  2001cited by this paper
• Poly(dA-dT) Promoter Elements Increase the Equilibrium Accessibility of Nucleosomal DNA Target Sites

  2001cited by this paper
• Measuring transcription of metalloproteinase genes. Nuclear run-off assay vs analysis of hnRNA.

  2001cited by this paper
• Measuring Transcription of Metalloproteinase Genes

  2001cited by this paper
• Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

  1998cited by this paper
• Regulation of catalases in Arabidopsis.

  1997cited by this paper
• Nucleosome Transactions on the Promoters of the YeastGAL and PHO Genes*

  1997cited by this paper
• Crystal structure of the nucleosome core particle at 2.8 Å resolution

  1997cited by this paper
• Catalase Is Encoded by a Multigene Family in Arabidopsis thaliana (L.) Heynh

  1996cited by this paper
• The circadian clock gates expression of twoArabidopsis catalase genes to distinct and opposite circadian phases

  1996cited by this paper
• Quantitative RT-PCR on CYP1A1 heterogeneous nuclear RNA: a surrogate for the in vitro transcription run-on assay.

  1996cited by this paper
• The transactivation domain of Pho4 is required for nucleosome disruption at the PHO5 promoter.

  1994cited by this paper
• A nucleosome precludes binding of the transcription factor Pho4 in vivo to a critical target site in the PHO5 promoter.

  1994cited by this paper
• Interactions between Light and the Circadian Clock in the Regulation of CAT2 Expression in Arabidopsis

  1994cited by this paper
• (CT)n (GA)n repeats and heat shock elements have distinct roles in chromatin structure and transcriptional activation of the Drosophila hsp26 gene

  1993cited by this paper
• A critical role for heat shock transcription factor in establishing a nucleosome‐free region over the TATA‐initiation site of the yeast HSP82 heat shock gene.

  1993cited by this paper
• TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG.

  1992cited by this paper
• DNA binding site preferences and transcriptional activation properties of the Arabidopsis transcription factor GBF1.

  1992cited by this paper
• The structure of DNA in a nucleosome.

  1990cited by this paper
• Nuclease hypersensitive sites in chromatin.

  1988cited by this paper
• Analysis of Photosynthesis with Mutants of Higher Plants and Algae

  1986cited by this paper
• Sequence periodicities in chicken nucleosome core DNA.

  1986cited by this paper
• Crystallographic structure of the octameric histone core of the nucleosome at a resolution of 3.3 A.

  1985cited by this paper
• Kinetic Studies on Growth of Excised Root Tips of Lycopersicum esculentum.

  1962cited by this paper

• Catalase: A critical node in the regulation of cell fate.

  2023cites this paper
• Photorespiration: regulation and new insights on the potential role of persulfidation

  2023influential citation
• Design and Analysis of Native Photorespiration Gene Motifs of Promoter Untranslated Region Combinations Under Short Term Abiotic Stress Conditions

  2022cites this paper
• Co-expression and regulation of photorespiratory genes in Arabidopsis thaliana: A bioinformatic approach

  2018cites this paper